Construct: shRNA TRCN0000176138

Construct Description:

Construct Type:
shRNA
Other Identifiers:
NM_145528.1-1445s1c1
DNA Barcode:
GATGCTGATCCTATGGTGAAT

Original Target:

Taxon:
Mus musculus (mouse)
Gene:
Atg13 (51897)
Gene Description:
autophagy related 13
Transcript:
RefSeq NM_145528.1 (NON-CURRENT)
Match location:
Position 1445 (CDS)

Vector Information:

Vector Backbone:
pLKO.1
Pol II Cassette 1:
PGK-PuroR
Pol II Cassette 2:
n/a
Pol III Promoter:
constitutive hU6
Pol III Insert:
(TRCN0000176138)
Selection Marker:
PuroR
Visible Reporter:
n/a

Current transcripts matched by this shRNA:

Sequence Information

Target Sequence:
GATGCTGATCCTATGGTGAAT
Hairpin Sequence:
5'-CCGG-GATGCTGATCCTATGGTGAAT-CTCGAG-ATTCACCATAGGATCAGCATC-TTTTTTG-3'

Oligo design for arrayed cloning:

Forward sequence:
5'-CCGGGATGCTGATCCTATGGTGAATCTCGAGATTCACCATAGGATCAGCATCTTTTTG-3'
Reverse sequence:
5'-AATTCAAAAAGATGCTGATCCTATGGTGAATCTCGAGATTCACCATAGGATCAGCATC-3'

Other clones with same target sequence:

  1. TRCN0000277075