Construct: shRNA TRCN0000178945

Construct Description:

Construct Type:
shRNA
Other Identifiers:
NM_001003917.1-2848s1c1
DNA Barcode:
CCAGGAAGAATATGAGGACTA

Original Target:

Taxon:
Mus musculus (mouse)
Gene:
Atg9a (245860)
Gene Description:
autophagy related 9A
Transcript:
RefSeq NM_001003917.1 (NON-CURRENT)
Match location:
Position 2848 (3UTR)

Vector Information:

Vector Backbone:
pLKO.1
Pol II Cassette 1:
PGK-PuroR
Pol II Cassette 2:
n/a
Pol III Promoter:
constitutive hU6
Pol III Insert:
(TRCN0000178945)
Selection Marker:
PuroR
Visible Reporter:
n/a

Current transcripts matched by this shRNA:

Sequence Information

Target Sequence:
CCAGGAAGAATATGAGGACTA
Hairpin Sequence:
5'-CCGG-CCAGGAAGAATATGAGGACTA-CTCGAG-TAGTCCTCATATTCTTCCTGG-TTTTTTG-3'

Oligo design for arrayed cloning:

Forward sequence:
5'-CCGGCCAGGAAGAATATGAGGACTACTCGAGTAGTCCTCATATTCTTCCTGGTTTTTG-3'
Reverse sequence:
5'-AATTCAAAAACCAGGAAGAATATGAGGACTACTCGAGTAGTCCTCATATTCTTCCTGG-3'

Other clones with same target sequence:

(none)