Construct: shRNA TRCN0000179894

Construct Description:

Construct Type:
shRNA
Other Identifiers:
NM_016843.1-1495s1c1
DNA Barcode:
CCAAGATGTCATTGCCAAGAT

Original Target:

Taxon:
Mus musculus (mouse)
Gene:
Atxn10 (54138)
Gene Description:
ataxin 10
Transcript:
RefSeq NM_016843.1 (NON-CURRENT)
Match location:
Position 1495 (3UTR)

Vector Information:

Vector Backbone:
pLKO.1
Pol II Cassette 1:
PGK-PuroR
Pol II Cassette 2:
n/a
Pol III Promoter:
constitutive hU6
Pol III Insert:
(TRCN0000179894)
Selection Marker:
PuroR
Visible Reporter:
n/a

Current transcripts matched by this shRNA:

Sequence Information

Target Sequence:
CCAAGATGTCATTGCCAAGAT
Hairpin Sequence:
5'-CCGG-CCAAGATGTCATTGCCAAGAT-CTCGAG-ATCTTGGCAATGACATCTTGG-TTTTTTG-3'

Oligo design for arrayed cloning:

Forward sequence:
5'-CCGGCCAAGATGTCATTGCCAAGATCTCGAGATCTTGGCAATGACATCTTGGTTTTTG-3'
Reverse sequence:
5'-AATTCAAAAACCAAGATGTCATTGCCAAGATCTCGAGATCTTGGCAATGACATCTTGG-3'

Other clones with same target sequence:

  1. TRCN0000285824