Construct: shRNA TRCN0000194178

Construct Description:

Construct Type:
shRNA
Other Identifiers:
NM_018852.1-583s1c1
DNA Barcode:
GAAAGGTTTATGTCAGCCAAT

Original Target:

Taxon:
Mus musculus (mouse)
Gene:
Scn9a (20274)
Gene Description:
sodium channel, voltage-gated, type IX, alpha
Transcript:
RefSeq NM_018852.1 (NON-CURRENT)
Match location:
Position 583 (CDS)

Vector Information:

Vector Backbone:
pLKO.1
Pol II Cassette 1:
PGK-PuroR
Pol II Cassette 2:
n/a
Pol III Promoter:
constitutive hU6
Pol III Insert:
(TRCN0000194178)
Selection Marker:
PuroR
Visible Reporter:
n/a

Current transcripts matched by this shRNA:

Sequence Information

Target Sequence:
GAAAGGTTTATGTCAGCCAAT
Hairpin Sequence:
5'-CCGG-GAAAGGTTTATGTCAGCCAAT-CTCGAG-ATTGGCTGACATAAACCTTTC-TTTTTTG-3'

Oligo design for arrayed cloning:

Forward sequence:
5'-CCGGGAAAGGTTTATGTCAGCCAATCTCGAGATTGGCTGACATAAACCTTTCTTTTTG-3'
Reverse sequence:
5'-AATTCAAAAAGAAAGGTTTATGTCAGCCAATCTCGAGATTGGCTGACATAAACCTTTC-3'

Other clones with same target sequence:

(none)