Construct: shRNA TRCN0000200423

Construct Description:

Construct Type:
shRNA
Other Identifiers:
NM_175488.3-1080s1c1
DNA Barcode:
GCCAAGACTCTAGGAAGTCAT

Original Target:

Taxon:
Mus musculus (mouse)
Gene:
Ccdc38 (237465)
Gene Description:
coiled-coil domain containing 38
Transcript:
RefSeq NM_175488.3 (NON-CURRENT)
Match location:
Position 1080 (CDS)

Vector Information:

Vector Backbone:
pLKO.1
Pol II Cassette 1:
PGK-PuroR
Pol II Cassette 2:
n/a
Pol III Promoter:
constitutive hU6
Pol III Insert:
(TRCN0000200423)
Selection Marker:
PuroR
Visible Reporter:
n/a

Current transcripts matched by this shRNA:

Sequence Information

Target Sequence:
GCCAAGACTCTAGGAAGTCAT
Hairpin Sequence:
5'-CCGG-GCCAAGACTCTAGGAAGTCAT-CTCGAG-ATGACTTCCTAGAGTCTTGGC-TTTTTTG-3'

Oligo design for arrayed cloning:

Forward sequence:
5'-CCGGGCCAAGACTCTAGGAAGTCATCTCGAGATGACTTCCTAGAGTCTTGGCTTTTTG-3'
Reverse sequence:
5'-AATTCAAAAAGCCAAGACTCTAGGAAGTCATCTCGAGATGACTTCCTAGAGTCTTGGC-3'

Other clones with same target sequence:

(none)