Construct: shRNA TRCN0000219988

Construct Description:

Construct Type:
shRNA
Other Identifiers:
NM_015542.2-4526s1c1
DNA Barcode:
CATCAGAGTCAGTGCTATAAA

Original Target:

Taxon:
Homo sapiens (human)
Gene:
UPF2 (26019)
Gene Description:
UPF2 regulator of nonsense mediated mRNA decay
Transcript:
RefSeq NM_015542.2 (NON-CURRENT)
Match location:
Position 4526 (3UTR)

Vector Information:

Vector Backbone:
pLKO.1
Pol II Cassette 1:
PGK-PuroR
Pol II Cassette 2:
n/a
Pol III Promoter:
constitutive hU6
Pol III Insert:
(TRCN0000219988)
Selection Marker:
PuroR
Visible Reporter:
n/a

Current transcripts matched by this shRNA:

Sequence Information

Target Sequence:
CATCAGAGTCAGTGCTATAAA
Hairpin Sequence:
5'-CCGG-CATCAGAGTCAGTGCTATAAA-CTCGAG-TTTATAGCACTGACTCTGATG-TTTTTG-3'

Oligo design for arrayed cloning:

Forward sequence:
5'-CCGGCATCAGAGTCAGTGCTATAAACTCGAGTTTATAGCACTGACTCTGATGTTTTTG-3'
Reverse sequence:
5'-AATTCAAAAACATCAGAGTCAGTGCTATAAACTCGAGTTTATAGCACTGACTCTGATG-3'

Other clones with same target sequence:

(none)