Construct: shRNA TRCN0000239213
Construct Description:
- Construct Type:
- shRNA
- Other Identifiers:
- NM_001102565.1-1597s21c1
- DNA Barcode:
- ACCTCCTCCTAGTCGTCAAAT
Original Target:
- Taxon:
-
Mus musculus (mouse)
- Gene:
- Alkbh1 (211064)
- Gene Description:
- alkB homolog 1, histone H2A dioxygenase
- Transcript:
- RefSeq NM_001102565.1 (CURRENT)
- Match location:
- Position 1597 (3UTR)
Vector Information:
- Vector Backbone:
- pLKO_005
- Pol II Cassette 1:
- PGK-PuroR
- Pol II Cassette 2:
- n/a
- Pol III Promoter:
- constitutive hU6
- Pol III Insert:
- (TRCN0000239213)
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
Current transcripts matched by this shRNA:
Sequence Information
- Target Sequence:
- ACCTCCTCCTAGTCGTCAAAT
- Hairpin Sequence:
-
5'-CCGG-ACCTCCTCCTAGTCGTCAAAT-CTCGAG-ATTTGACGACTAGGAGGAGGT-TTTTTG-3'
Oligo design for arrayed cloning:
- Forward sequence:
- 5'-CCGGACCTCCTCCTAGTCGTCAAATCTCGAGATTTGACGACTAGGAGGAGGTTTTTTG-3'
- Reverse sequence:
- 5'-AATTCAAAAAACCTCCTCCTAGTCGTCAAATCTCGAGATTTGACGACTAGGAGGAGGT-3'
Other clones with same target sequence:
(none)
