Construct: shRNA TRCN0000373716

Construct Description:

Construct Type:
shRNA
Other Identifiers:
NM_006586.3-694s21c1
DNA Barcode:
AGAAGGCCTCTGGAGTCAAAT

Original Target:

Taxon:
Homo sapiens (human)
Gene:
CNPY3 (10695)
Gene Description:
canopy FGF signaling regulator 3
Transcript:
RefSeq NM_006586.3 (NON-CURRENT)
Match location:
Position 694 (CDS)

Vector Information:

Vector Backbone:
pLKO_005
Pol II Cassette 1:
PGK-PuroR
Pol II Cassette 2:
n/a
Pol III Promoter:
constitutive hU6
Pol III Insert:
(TRCN0000373716)
Selection Marker:
PuroR
Visible Reporter:
n/a

Current transcripts matched by this shRNA:

Taxon Gene Symbol Description Transcript SDR Match %[?] Region Start Pos.[?] Intrinsic Score[?] Adjusted Score[?]
1 human 10695 CNPY3 canopy FGF signaling regula... NM_001318842.1 100% CDS 686 13.200 9.240
2 human 10695 CNPY3 canopy FGF signaling regula... NM_001318847.2 100% CDS 336 13.200 9.240
3 human 10695 CNPY3 canopy FGF signaling regula... NM_001318848.2 100% CDS 336 13.200 9.240
4 human 10695 CNPY3 canopy FGF signaling regula... NM_006586.5 100% CDS 336 13.200 9.240
5 human 10695 CNPY3 canopy FGF signaling regula... NR_134880.1 100% 3UTR 686 13.200 9.240
6 human 10695 CNPY3 canopy FGF signaling regula... NR_134881.1 100% 3UTR 1879 13.200 9.240
7 human 10695 CNPY3 canopy FGF signaling regula... NR_134885.2 100% 3UTR 433 13.200 9.240
8 human 2350 FOLR2 folate receptor beta NM_000803.5 89% CDS 705
9 human 2350 FOLR2 folate receptor beta NM_001113534.2 89% CDS 699
10 human 2350 FOLR2 folate receptor beta NM_001113535.2 89% CDS 693
11 human 2350 FOLR2 folate receptor beta NM_001113536.2 89% CDS 687
12 human 2350 FOLR2 folate receptor beta XM_005273856.4 89% CDS 720
13 human 2350 FOLR2 folate receptor beta XM_024448412.1 89% CDS 726
14 human 23612 PHLDA3 pleckstrin homology like do... NM_012396.5 85% 3UTR 1275
15 human 23612 PHLDA3 pleckstrin homology like do... NR_073080.1 85% 3UTR 1352
16 mouse 12443 Ccnd1 cyclin D1 NM_007631.2 85% CDS 985
17 mouse 12443 Ccnd1 cyclin D1 XM_011241977.1 85% CDS 1063
18 mouse 72029 Cnpy3 canopy FGF signaling regula... NM_001305988.1 89% CDS 336
19 mouse 72029 Cnpy3 canopy FGF signaling regula... NM_001305989.1 89% 5UTR 336
20 mouse 72029 Cnpy3 canopy FGF signaling regula... NM_028065.4 89% CDS 336
21 mouse 72029 Cnpy3 canopy FGF signaling regula... XM_017317654.1 89% 5UTR 157
22 mouse 72029 Cnpy3 canopy FGF signaling regula... XR_001782114.1 89% 3UTR 400
23 mouse 108043 Chrnb3 cholinergic receptor, nicot... NM_027454.4 89% CDS 1409
24 mouse 108043 Chrnb3 cholinergic receptor, nicot... NM_173212.4 89% CDS 1454
25 mouse 102639955 Gm36146 predicted gene, 36146 XR_383420.2 89% 3UTR 3492
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Sequence Information

Target Sequence:
AGAAGGCCTCTGGAGTCAAAT
Hairpin Sequence:
5'-CCGG-AGAAGGCCTCTGGAGTCAAAT-CTCGAG-ATTTGACTCCAGAGGCCTTCT-TTTTTG-3'

Oligo design for arrayed cloning:

Forward sequence:
5'-CCGGAGAAGGCCTCTGGAGTCAAATCTCGAGATTTGACTCCAGAGGCCTTCTTTTTTG-3'
Reverse sequence:
5'-AATTCAAAAAAGAAGGCCTCTGGAGTCAAATCTCGAGATTTGACTCCAGAGGCCTTCT-3'

Other clones with same target sequence:

(none)