Construct: ORF TRCN0000465489

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF015892.1_s317c1
Derived from:
ccsbBroadEn_01343
DNA Barcode:
GTGGTAATTTTAACGGACCCTATA
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PTPN9 (5780)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000465489
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 5780 PTPN9 protein tyrosine phosphatas... NM_002833.4 100% 100%
2 mouse 56294 Ptpn9 protein tyrosine phosphatas... NM_019651.2 91.6% 97.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1845
ORF length:
1779
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgga gcccgcgacc gcgccccggc ccgacatggc gccggagctg accccggagg
121aggagcaggc taccaagcag tttctcgaag agattaacaa gtggacagtt cagtacaatg
181tttccccgct gtcttggaat gtggctgtca agttcctcat ggcaaggaag tttgatgtgc
241tccgtgccat agaattgttc cactcctaca gagaaactcg aaggaaggaa ggcattgtaa
301agctgaaacc tcatgaggaa cctcttcgtt ctgagatcct cagtggaaaa ttcaccatct
361taaatgttcg ggacccaaca ggagcctcca ttgccctctt tactgccagg ttgcatcatc
421cccacaagtc agtccaacat gtggtacttc aggctctgtt ttacttgcta gacagagctg
481tggatagctt tgaaactcag aggaatggac tggtgtttat ctatgacatg tgtggttcta
541attatgccaa ctttgagctg gatcttggca agaaagtcct aaacctgctg aagggagcat
601ttccagctcg tttgaagaag gtgctgattg tgggggcacc catatggttc cgagtgccct
661attccatcat cagtctcctc ctgaaggaca aagtccggga gaggattcaa atattaaaga
721catctgaggt cacgcagcat ctgcccaggg agtgtcttcc agaaaacctg ggtgggtacg
781tcaaaattga tctcgccact tggaatttcc agttcctacc ccaggtgaac ggccacccag
841atcccttcga tgagatcatc ctgttctccc tccctcctgc cttagactgg gactcagtac
901atgttccagg tccccatgct atgaccatcc aagagttggt ggactatgtt aatgccaggc
961aaaagcaagg aatctatgag gaatatgaag acattcgtcg tgagaaccct gttggcactt
1021tccactgttc catgtctcca ggaaacctag agaaaaaccg ttatggggat gtaccctgcc
1081tggaccaaac tagagtgaag ctaacaaagc gaagtggcca tactcagaca gattacatca
1141atgccagttt catggatggc tacaagcaga agaatgctta cattggcaca caaggtcctt
1201tggagaatac ctatcgtgat ttctggctca tggtatggga gcaaaaagtc ttggtgattg
1261tcatgaccac ccgctttgag gaaggcggca ggagaaagtg tggccagtac tggcctttag
1321aaaaagactc tcggatccga tttggcttcc tcacagtgac caatctaggc gtggagaaca
1381tgaatcatta taagaaaaca acgctagaaa ttcacaacac agaggaacgg cagaaacgcc
1441aggtgaccca cttccagttc ttgagctggc cagactatgg tgtcccttcc TCAGCAGCTT
1501CCCTCATTGA CTTCTTGAGA GTGGTCAGAA ACCAGCAGAG TCTGGCTGTG AGCAACATGG
1561GAGCACGCTC CAAAGGGCAG TGCCCTGAGC CACCCATTGT GGTCCATTGC AGTGCAGGCA
1621TTGGCAGGAC AGGTACCTTC TGCTCACTGG ACATCTGCCT GGCACAGCTG GAGGAGCTTG
1681GCACCCTTAA TGTGTTCCAG ACGGTGTCAC GCATGAGGAC CCAGAGGGCC TTCAGCATCC
1741AGACCCCTGA GCAGTACTAT TTTTGCTACA AGGCCATCCT GGAGTTCGCA GAGAAGGAGG
1801GCATGGTATC CTCTGGCCAA AACCTGCTGG CCGTGGAGAG TCAGTACCCA ACTTTCTTGT
1861ACAAAGTGGT TGATATCGGT AAGCCTATCC CTAACCCTCT CCTCGGTCTC GATTCTACGT
1921AGTAATGAAC TAGTCCGTAA CTTGAAAGTA TTTCGATTTC TTGGCTTTAT ATATCTTGTG
1981GAAAGGACGA GTGGTAATTT TAACGGACCC TATAACGCGT TAAGTCgaca atcaacctct
2041ggattacaaa atttgtgaaa gatt

Download FASTA (ORF) (Full)