Construct: ORF TRCN0000465950
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF014461.1_s317c1
- Derived from:
- ccsbBroadEn_03653
- DNA Barcode:
- TCCCAACCTTTAAGGGGCCAACAC
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- PRR11 (55771)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000465950
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 55771 | PRR11 | proline rich 11 | NM_018304.4 | 100% | 100% | |
| 2 | human | 55771 | PRR11 | proline rich 11 | XM_024450828.1 | 100% | 100% |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1146
- ORF length:
- 1080
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatgcc caagttcaaa caacgaagac gaaagctaaa agccaaagcc gaaagattat 121 tcaaaaaaaa agaagcctct cactttcagt ccaagctaat tacacctcct cctccaccac 181 cctcaccaga aagagtcggt atttcttcaa tagatatatc tcaaagcaga agctggctaa 241 catcatcctg gaacttcaat tttcctaaca tcagagatgc aataaaactt tggacaaata 301 gagtatggtc tatatacagc tggtgccaga actgcataac ccagagttta gaagtattga 361 aagacaccat ctttccatct cgtatctgcc accgagaact ttacagtgta aaacaacagt 421 tttgcatttt ggaaagtaaa ttatgcaagc tccaggaagc actgaagacc atctcagaaa 481 gttcttcctg tccaagctgt ggtcaaacat gtcacatgag tggtaaactt acaaatgtgc 541 ctgcctgcgt tctgatcacc cctggagact ccaaagctgt gcttcctccc acactgccac 601 agccagccag ccattttcct cctcctcctc cacctccacc tctgccacct cctccaccac 661 cactagcacc tgtgttgctc agaaaaccca gtctcgctaa agcacttcag gctggaccat 721 taaaaaaaga tggacccatg cagataacag ttaaagatct gctgactgta aaattaaaga 781 agacacagag tttagatgaa aagaggaagc ttataccatc gccgaaagca cggaatccac 841 tagttaccgt cTCTGACTTG CAGCATGTTA CCCTGAAACC TAACTCCAAA GTGTTATCGA 901 CTCGAGTTAC AAACGTCTTA ATCACTCCTG GAAAAAGTCA GATGGATCTG CGGAAACTGC 961 TTAGAAAAGT CGATGTAGAG AGGAGCCCAG GTGGAACCCC TCTTACCAAT AAGGAAAATA 1021 TGGAAACAGG AACAGGACTG ACTCCAGTGA TGACGCAGGC CTTAAGGAGA AAGTTTCAGC 1081 TGGCTCACCC TAGAAGCCCA ACTCCAACTC TGCCACTTTC TACAAGCAGC TTTGATGAAC 1141 AAAACTGCCC AACTTTCTTG TACAAAGTGG TTGATATCGG TAAGCCTATC CCTAACCCTC 1201 TCCTCGGTCT CGATTCTACG TAGTAATGAA CTAGTCCGTA ACTTGAAAGT ATTTCGATTT 1261 CTTGGCTTTA TATATCTTGT GGAAAGGACG ATCCCAACCT TTAAGGGGCC AACACACGCG 1321 TTAAGTCgac aatcaacctc tggattacaa aatttgtgaa agatt