Construct: ORF TRCN0000466322

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF012753.1_s317c1
Derived from:
ccsbBroadEn_03704
DNA Barcode:
CGCACACTCACTTAATCGTGGATC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PCDHGA5 (56110)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000466322
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 56110 PCDHGA5 protocadherin gamma subfami... NM_032054.1 100% 100%
2 human 56110 PCDHGA5 protocadherin gamma subfami... NM_018918.2 86.7% 86.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
2508
ORF length:
2439
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat ggcgagtcca cctaggggct ggggctgcgg agagctgctg ctgcccttca
121tgctcctggg gacgctgtgc gagccaggat ccgggcagat ccgctactcg atgccggagg
181agctggacaa aggctccttc gtcggcaaca tagccaagga ccttgggctg gagccccagg
241agctggcgga gcgcggagtc cgcatcgtct ccagaggtag gacgcagctt tttgccctga
301acccgcgaag cggcagcttg gtcaccgcgg gcaggataga ccgggaggag ctctgcgctc
361agagcccact gtgtgtggtg aactttaaca tcttggttga gaacaaaatg aaaatttatg
421gagtagaagt agaaataatc gatattaatg ataacttccc gcgtttccgg gatgaagagt
481taaaagtaaa agttaatgaa aatgcggctg cagggacacg gttagtgctt cccttcgcgc
541gggatgcgga tgtgggtgtg aactctctcc ggagttacca gctcagctcc aatctgcact
601tctctctgga tgtggtaagc ggaactgatg gacaaaagta tccggagctg gtgttggaac
661agcccctaga ccgcgagaaa gagactgttc acgacctcct cctcacagct ttagatggcg
721gagacccggt actctccggc accacgcaca tccgtgttac ggtcctcgac gcaaacgaca
781atgcgcccct gttcacccca tccgagtaca gcgtgagtgt tccagagaac atacctgtgg
841gcactcggct gctcatgcta accgccacgg atccagatga gggaataaac gggaaattga
901cctactcttt tcgcaatgaa gaagaaaaaa tttcggagac tttccaactt gattccaacc
961tgggggaaat ctcaactcta caatcactgg actatgaaga atccagattc tacctcatgg
1021aagtggtagc tcaggatgga ggcgctcttg ttgccagcgc taaggtggtg gtcacagtac
1081aggacgtgaa tgacaatgcc cccgaagtga tcctcacctc tctgaccagt tcgatctctg
1141aagactgtct tcccggaact gtaatcgcgc tgtttagcgt acatgatggt gattctggag
1201aaaatggtga gattgcatgc tctattccta ggaatttgcc ttttaaattg gagaagtcag
1261ttgataatta ctatcaccta ttaacaacta gggacctgga cagagaagag acttcagatt
1321ataatatcac tttaaccgtc atggaccatg gaaccccgcc cctctctaca gaaagccaca
1381tccccttgaa agtagcagac gttaatgaca acccacccaa tttccctcaa gcctcctact
1441ccacctctgt cacagaaaac aatcccagag gtgtctctat cttctctgtg acagcccatg
1501accccgacag cggcgacaac gctcgagtca cctactccct ggctgaagac acatttcagg
1561gggcgccctt gtcctcctat gtatccatta actctgacac cggtgtcctg tatgctctga
1621gatccttcga ctatgagcag ttgagagacc tacagttgtg ggtgacagcc agcgacagtg
1681ggaaccctcc acttagcagc aacgtgtcgc tgagcctgtt tgtgctggac cagaacgaca
1741atacgcctga gatcctgtac cccgccctcc ccacagacgg ttccacgggc gtggagctgg
1801cgcctcgctc cgcagaacct ggctacctgg tgaccaaggt ggtagcggtg gacaaagatt
1861caggccagaa cgcctggctg tcctaccgcc tgcttaaggc cagcgagcca ggactctttg
1921cggttgggct gcacacgggc gaggtgcgca cagcgcgagc cctgctggac agagacgcgc
1981tcaagcagag cctcgtggtg gccgtcgaag accatggcca gccccctctg tcagccacct
2041tcacggtcac cgttgccgtg gccgacagga tccctgacat cctggctgac ctaggcagta
2101tcaagacccc cattgaccct gaggatctgg acctcacact ctatcttgtg gtggcagtgg
2161ctgcagtctc ctgcgtcttc ctggccttcg tcatcgtgct gctggtgcTC AGACTGAGGC
2221GCTGGCACAA GTCACGCCTG CTTCAGGCTG AAGGCAGCAG GTTGGCGGGT GTGCCCGCCT
2281CGCACTTTGT GGGCGTGGAT GGGGTTCGGG CTTTCCTGCA GACCTATTCC CACGAGGTCT
2341CCCTCACCGC GGACTCGAGG AAGAGTCACC TGATCTTTCC CCAGCCCAAC TACGCAGACA
2401CGCTCCTTAG TGAAGAGAGC TGTGAGAAAA GCGAGCCTCT TCTGATGTCT GATAAGGTAG
2461ATGCAAACAA AGAAGAACGG CGAGTTCAGG TTAGTTTTCT CTTTCGGTTG CCAACTTTCT
2521TGTACAAAGT GGTTGATATC GGTAAGCCTA TCCCTAACCC TCTCCTCGGT CTCGATTCTA
2581CGTAGTAATG AACTAGCCCG TAACTTGAAA GTATTTCGAT TTCTTGGCTT TATATATCTT
2641GTGGAAAGGA CGACGCACAC TCACTTAATC GTGGATCACG CGTTAAGTCg acaatcaacc
2701tctggattac aaaatttgtg aaagatt

Download FASTA (ORF) (Full)