Construct: ORF TRCN0000466578
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF002395.1_s317c1
- Derived from:
- ccsbBroadEn_03156
- DNA Barcode:
- AATGAACGGGACAAGGCGTGGCGT
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- F11R (50848)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000466578
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 50848 | F11R | F11 receptor | NM_016946.6 | 100% | 100% | |
| 2 | human | 50848 | F11R | F11 receptor | NM_001348091.2 | 83.6% | 83.6% | 240_241ins147 |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 963
- ORF length:
- 897
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatggg gacaaaggcg caagtcgaga ggaaactgtt gtgcctcttc atattggcga 121 tcctgttgtg ctccctggca ttgggcagtg ttacagtgca ctcttctgaa cctgaagtca 181 gaattcctga gaataatcct gtgaagttgt cctgtgccta ctcgggcttt tcttctcccc 241 gtgtggagtg gaagtttgac caaggagaca ccaccagact cgtttgctat aataacaaga 301 tcacagcttc ctatgaggac cgggtgacct tcttgccaac tggtatcacc ttcaagtccg 361 tgacacggga agacactggg acatacactt gtatggtctc tgaggaaggc ggcaacagct 421 atggggaggt caaggtcaag ctcatcgtgc ttgtgcctcc atccaagcct acagttaaca 481 tcccctcctc tgccaccatt gggaaccggg cagtgctgac atgctcagaa caagatggtt 541 ccccaccttc tgaatacacc tggttcaaag atgggatagt gatgcctacg aatcccaaaa 601 gcacccgtgc cttcagcaac tcttcctatg tcctgaatcc cacaacagga gagctggtct 661 ttgaTCCCCT GTCAGCCTCT GATACTGGAG AATACAGCTG TGAGGCACGG AATGGGTATG 721 GGACACCCAT GACTTCAAAT GCTGTGCGCA TGGAAGCTGT GGAGCGGAAT GTGGGGGTCA 781 TCGTGGCAGC CGTCCTTGTA ACCCTGATTC TCCTGGGAAT CTTGGTTTTT GGCATCTGGT 841 TTGCCTATAG CCGAGGCCAC TTTGACAGAA CAAAGAAAGG GACTTCGAGT AAGAAGGTGA 901 TTTACAGCCA GCCTAGTGCC CGAAGTGAAG GAGAATTCAA ACAGACCTCG TCATTCCTGG 961 TGTGCCCAAC TTTCTTGTAC AAAGTGGTTG ATATCGGTAA GCCTATCCCT AACCCTCTCC 1021 TCGGTCTCGA TTCTACGTAG TAATGAACTA GTCCGTAACT TGAAAGTATT TCGATTTCTT 1081 GGCTTTATAT ATCTTGTGGA AAGGACGAAA TGAACGGGAC AAGGCGTGGC GTACGCGTTA 1141 AGTCgacaat caacctctgg attacaaaat ttgtgaaaga tt