Construct: ORF TRCN0000466608
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF017236.1_s317c1
- Derived from:
- ccsbBroadEn_10607
- DNA Barcode:
- CTCTTTCCGAGGCTCCTTATCCTC
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- LINC00636 (285205)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000466608
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 285205 | LINC00636 | long intergenic non-protein... | NR_015394.1 | 31% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 495
- ORF length:
- 426
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcaccat gacttcgggc ctagccaaat gccaagctat gcTAAGGGAA GTTGGGGTTC 121 TTGTCCTGGA AAATTGCAGA ATGGACGCAG AAATCCATTA CTGCGCGCGG CGGGGAAGAG 181 GACGCCGCCG GGAGCTGGTG CGTGACACAC TGCAGCCTCG CGGGCTGCCC TGGACTTCAT 241 CAAGCCCGGG TCGGCTCGGG GCGGGCAGGG GTAGGATCCA TACCGCCGAA CTGCGGCCCC 301 GCTGCTCGCA GCCGCTCTCC CGGGAGCGCC CGCTTAGGAC TCACTCCCGC CCATTCCTTA 361 CCTCGATGGA ATCCTTAGCC CTTAGAGAGA GGGCTAAAAA ACAAATAAAC AAACAACAGA 421 CAAACAAAAA AAAAACCAAA TTCCAAATGG CCCCCGGACC CTCCCGCAGA TGCAGGGCGC 481 ACACTGGCCA GTTCTTGCCA ACTTTCTTGT ACAAAGTGGT TGATATCGGT AAGCCTATCC 541 CTAACCCTCT CCTCGGTCTC GATTCTACGT AGTAATGAAC TAGTCCGTAA CTTGAAAGTA 601 TTTCGATTTC TTGGCTTTAT ATATCTTGTG GAAAGGACGA CTCTTTCCGA GGCTCCTTAT 661 CCTCACGCGT TAAGTCgaca atcaacctct ggattacaaa atttgtgaaa gatt