Construct: ORF TRCN0000467946
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF002881.1_s317c1
- Derived from:
- ccsbBroadEn_10390
- DNA Barcode:
- TGCTGGGGCGCCCGCTGCCAGAGC
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- FAR2P1 (440905)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000467946
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 100216479 | FAR2P2 | fatty acyl-CoA reductase 2 ... | NR_046259.1 | 12.3% | (many diffs) | |
| 2 | human | 100216479 | FAR2P2 | fatty acyl-CoA reductase 2 ... | NR_046260.1 | 12% | (many diffs) | |
| 3 | human | 100216479 | FAR2P2 | fatty acyl-CoA reductase 2 ... | NR_046258.1 | 11.9% | (many diffs) | |
| 4 | human | 440905 | FAR2P1 | fatty acyl-CoA reductase 2 ... | NR_026758.2 | 8.6% | 1_2647del;2743delG;3042_4541del |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 462
- ORF length:
- 393
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcaccat gagagaattt tctttaattg aactctggtt aatgccaaaa gtgttcaatc 121 actatgtgtg gggaagtttc ctggtacaaa ggaaaaaaaa acaaccTAAG TCAGTGTTAG 181 TCTACCACTG TACATCTGGT AACCTCAATC CCTGCAACCG GGGCAAAATG GGTTTCCAGG 241 TCTTGGCAAC CTTTGAAATT CCAATTCCAT TTGAGAGAGC TTTGACGAGG CCATATGCTG 301 ATTTCACCAC CAGCAACTTC AGAACCCAGT ACTGGAATGC CATCAGCCAG CAGGCCCCTG 361 CCATCATCTA TGACTTCTAT CTGTGGCTCA CTGGAAGGAA ACCCAGCTAC CGAAGGAAGA 421 TACCCTCATC AACCCAATTT TACAAATGGA GAAATAGAAG TTTGCCAACT TTCTTGTACA 481 AAGTGGTTGA TATCGGTAAG CCTATCCCTA ACCCTCTCCT CGGTCTCGAT TCTACGTAGT 541 AATGAACTAG TCCGTAACTT GAAAGTATTT CGATTTCTTG GCTTTATATA TCTTGTGGAA 601 AGGACGATGC TGGGGCGCCC GCTGCCAGAG CACGCGTTAA GTCgacaatc aacctctgga 661 ttacaaaatt tgtgaaagat t