Construct: ORF TRCN0000468570
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF009469.1_s317c1
- Derived from:
- ccsbBroadEn_12268
- DNA Barcode:
- TAATAACCCCAAAGGATCTAATCC
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- UGGT2 (55757)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000468570
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 55757 | UGGT2 | UDP-glucose glycoprotein gl... | XM_011521100.2 | 25.9% | 25.8% | 831_844del;849_3216del |
| 2 | human | 55757 | UGGT2 | UDP-glucose glycoprotein gl... | XR_931617.1 | 22.4% | 1_125del;956_969del;974_3720del | |
| 3 | human | 55757 | UGGT2 | UDP-glucose glycoprotein gl... | XR_001749630.1 | 21.6% | 1_125del;956_969del;974_3845del | |
| 4 | human | 55757 | UGGT2 | UDP-glucose glycoprotein gl... | NM_020121.4 | 18.3% | 18.2% | 831_844del;849_4548del |
| 5 | human | 55757 | UGGT2 | UDP-glucose glycoprotein gl... | XM_017020662.1 | 18.3% | 18.2% | 831_844del;849_4557del |
| 6 | human | 55757 | UGGT2 | UDP-glucose glycoprotein gl... | XM_011521097.1 | 18% | 17.9% | 831_844del;849_4629del |
| 7 | human | 55757 | UGGT2 | UDP-glucose glycoprotein gl... | XM_011521096.1 | 17.9% | 17.9% | 831_844del;849_4638del |
| 8 | human | 55757 | UGGT2 | UDP-glucose glycoprotein gl... | XM_011521095.1 | 17.7% | 17.7% | 831_844del;849_4689del |
| 9 | human | 55757 | UGGT2 | UDP-glucose glycoprotein gl... | XM_011521094.1 | 17.4% | 17.4% | 831_844del;849_4770del |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 900
- ORF length:
- 834
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatggc gccagcgaaa gccacgaacg tggtgcggct gctactaggc tccacagcgc 121 tgtggctttc gcagctcggc tccgggacgg tcgccgcgtc caagtcggtg actgcccact 181 tggccgcgaa gtggcccgag accccgctgc tgctggaggc aagtgaattt atggcagaag 241 aaagtaatga aaaattttgg cagtttttgg aaactgtgca agaattagca atttataagc 301 aaacagaatc agattattct tattacaact taatcctgaa gaaagctgga cagtttctag 361 acaatttaca catcaacctt ttaaagtttg ctttctctat aagggcatac tccccagcta 421 tTCAGATGTT TCAGCAGATT GCAGCTGATG AGCCACCACC AGATGGTTGT AATGCATTTG 481 TGGTTATTCA TAAGAAGCAC ACCTGTAAAA TTAATGAGAT TAAAAAGCTG CTGAAGAAAG 541 CTGCTTCAAG GACTAGACCT TATCTATTTA AAGGAGATCA CAAATTTCCT ACAAACAAAG 601 AGAACTTACC AGTGGTGATT CTCTATGCCG AAATGGGTAC TAGAACATTT AGTGCATTTC 661 ACAAAGTATT GTCTGAAAAA GCTCAAAATG AGGAAATTCT GTATGTTCTT CGCCATTATA 721 TTCAGAAACC AAGCTCACGG AAAATGTACT TATCTGGGTA TGGTGTGGAG CTAGCAATTA 781 AGAGTACAGA ATACAAAGCA CTGGATGATA CCCAAGTTAA AACTGTGACT AATACTACTG 841 TAGAGGATGA GACTGAAACA AATGAAGTTC AAGGATTTCT CTTTGGGAAA CTAAAATCTT 901 ACCCAACTTT CTTGTACAAA GTGGTTGATA TCGGTAAGCC TATCCCTAAC CCTCTCCTCG 961 GTCTCGATTC TACGTAGTAA TGAACTAGTC CGTAACTTGA AAGTATTTCG ATTTCTTGGC 1021 TTTATATATC TTGTGGAAAG GACGATAATA ACCCCAAAGG ATCTAATCCA CGCGTTAAGT 1081 Cgacaatcaa cctctggatt acaaaatttg tgaaagatt