Construct: ORF TRCN0000468741

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF014968.1_s317c1
Derived from:
ccsbBroadEn_03518
DNA Barcode:
AATAAATGATTCGCTAAGATCCCT
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
IFT57 (55081)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000468741
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 55081 IFT57 intraflagellar transport 57 NM_018010.4 100% 100%
2 mouse 73916 Ift57 intraflagellar transport 57 NM_028680.3 87.7% 90.6% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1353
ORF length:
1287
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgac tgctgctctg gccgtcgtca cgacgtcggg tttggaagat ggggtgccta
121ggtcccgtgg cgaagggacc ggggaagtgg tcttggagcg ggggcccggc gcggcctacc
181acatgttcgt ggtgatggag gacttggtgg agaagctgaa gctgctccgc tacgaggagg
241agttcctccg gaagagcaac ctgaaggccc cgtccagaca ctattttgca ctgcctacca
301accctggcga acagttctac atgttttgta ctcttgctgc ttggttgatt aataaagcgg
361gacgtccctt tgagcagcct caagaatatg atgaccctaa tgcaacaata tctaacatac
421tatccgagct tcggtcattt ggaagaactg cagattttcc tccttcaaaa ttaaagtcag
481gttatggaga acatgtatgc tatgttcttg attgcttcgc tgaagaagca ttgaaatata
541ttggtttcac ctggaaaagg ccaatatacc cagtagaaga attagaagaa gaaagcgttg
601cagaagatga tgcagaatta acattaaata aagtggatga agaatttgtg gaagaagaga
661cagataatga agaaaacttt attgatctca acgttttaaa ggcccagaca tatcacttgg
721atatgaacga gactgccaaa caagaagata ttttggaatc cacaacagat gctgcagaat
781ggagcctaga agtggaacgt gtactaccgc aactgaaagt cacgattagg actgacaata
841aggattggag aatccatgtt gaccaaatgc accagcacag aagtggaatt gaaTCTGCTC
901TAAAGGAGAC CAAGGGATTT TTGGACAAAC TCCATAATGA AATTACTAGG ACTTTGGAAA
961AGATCAGCAG CCGAGAAAAG TACATCAACA ATCAGCTTGA GAATTTGGTT CAAGAATATC
1021GTGCAGCTCA AGCCCAGCTG AGTGAGGCAA AGGAGCGATA CCAGCAGGGA AATGGAGGAG
1081TGACGGAAAG AACCAGACTC CTCTCTGAGG TTATGGAAGA ATTAGAAAAG GTAAAACAAG
1141AAATGGAAGA AAAGGGCAGC AGCATGACTG ATGGTGCTCC TTTGGTGAAG ATTAAACAGA
1201GCTTAACAAA ACTGAAGCAA GAAACTGTAG AGATGGACAT TAGAATTGGC ATTGTGGAAC
1261ACACACTACT CCAATCAAAG CTGAAGGAGA AGTCCAACAT GACTAGGAAC ATGCATGCCA
1321CAGTTATTCC AGAACCAGCA ACAGGCTTTT ATTATCCAAC TTTCTTGTAC AAAGTGGTTG
1381ATATCGGTAA GCCTATCCCT AACCCTCTCC TCGGTCTCGA TTCTACGTAG TAATGAACTA
1441GCCCGTAACT TGAAAGTATT TCGATTTCTT GGCTTTATAT ATCTTGTGGA AAGGACGAAA
1501TAAATGATTC GCTAAGATCC CTACGCGTTA AGTCgacaat caacctctgg attacaaaat
1561ttgtgaaaga tt

Download FASTA (ORF) (Full)