Construct: ORF TRCN0000469282

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF016972.1_s317c1
Derived from:
ccsbBroadEn_05838
DNA Barcode:
ACCGATGTACGCTTAAGTATGAGG
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
APOC2 (344)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000469282
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 344 APOC2 apolipoprotein C2 NM_000483.5 99.6% 99% 106T>C
2 human 100533990 APOC4-APOC2 APOC4-APOC2 readthrough (NM... NR_037932.1 16.5% 1_1207del;1313T>C;1511_1829del
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
90
ORF end:
393
ORF length:
303
Sequence:
1TCAGACAGTG GTTCAAAGTT TTTTTCTTCC ATTTCAGGTG TCGTGAGGCT AGCATCGATT
61GATCAACAAG TTTGTACAAA AAAGTTGGCA TGGGCACACG ACTCCTCCCA GCTCTGTTTC
121TTGTCCTCCT GGTATTGGGA TTTGAGGTCC AGGGGACCCA ACAGCCCCAG CAAGATGAGA
181TGCCTAGCCC GACCCTCCTC ACCCAGGTGA AGGAATCTCT CTCCAGTTAC TGGGAGTCAG
241CAAAGACAGC CGCCCAGAAC CTGTACGAGA AGACATACCT GCCCGCTGTA GATGAGAAAC
301TCAGGGACTT GTACAGCAAA AGCACAGCAG CCATGAGCAC TTACACAGGC ATTTTTACTG
361ACCAAGTTCT TTCTGTGCTG AAGGGAGAGG AGTACCCAAC TTTCTTGTAC AAAGTGGTTG
421ATATCGGTAA GCCTATCCCT AACCCTCTCC TCGGTCTCGA TTCTACGTAG TAATGAACTA
481GTCCGTAACT TGAAAGTATT TCGATTTCTT GGCTTTATAT ATCTTGTGGA AAGGACGAAC
541CGATGTACGC TTAAGTATGA GGACGCGTTA AGTCgacaat caacctctgg attacaaaat
601ttgtgaaaga tt

Download FASTA (ORF) (Full)

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