Construct: ORF TRCN0000469396
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF001393.1_s317c1
- Derived from:
- ccsbBroadEn_00938
- DNA Barcode:
- CCCCATACTGATTCACGAGTTCGT
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- LGALS3BP (3959)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000469396
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 3959 | LGALS3BP | galectin 3 binding protein | NM_005567.4 | 100% | 100% |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1821
- ORF length:
- 1755
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatgac ccctccgagg ctcttctggg tgtggctgct ggttgcagga acccaaggcg 121 tgaacgatgg tgacatgcgg ctggccgatg ggggcgccac caaccagggc cgcgtggaga 181 tcttctacag aggccagtgg ggcactgtgt gtgacaacct gtgggacctg actgatgcca 241 gcgtcgtctg ccgggccctg ggcttcgaga acgccaccca ggctctgggc agagctgcct 301 tcgggcaagg atcaggcccc atcatgctgg atgaggtcca gtgcacggga accgaggcct 361 cactggccga ctgcaagtcc ctgggctggc tgaagagcaa ctgcaggcac gagagagacg 421 ctggtgtggt ctgcaccaat gaaaccagga gcacccacac cctggacctc tccagggagc 481 tctcggaggc ccttggccag atctttgaca gccagcgggg ctgcgacctg tccatcagcg 541 tgaatgtgca gggcgaggac gccctgggct tctgtggcca cacggtcatc ctgactgcca 601 acctggaggc ccaggccctg tggaaggagc cgggcagcaa tgtcaccatg agtgtggatg 661 ctgagtgtgt gcccatggtc agggaccttc tcaggtactt ctactcccga aggattgaca 721 tcaccctgtc gtcagtcaag tgcttccaca agctggcctc tgcctatggg gccaggcagc 781 tgcagggcta ctgcgcaagc ctctttgcca tcctcctccc ccaggacccc tcgttccaga 841 tgcccctgga cctgtatgcc tatgcagtgg ccacagggga cgccctgctg gagaagctct 901 gcctacagtt cctggcctgg aacttcgagg ccttgacgca ggccgaggcc tggcccagtg 961 tccccacaga cctgctccaa ctgctgctgc ccaggagcga cctggcggtg cccagcgagc 1021 tggccctact gaaggccgtg gacacctgga gctgggggga gcgtgcctcc catgaggagg 1081 tggagggctt ggtggagaag atccgcttcc ccatgatgct ccctgaggag ctctttgagc 1141 tgcagttcaa cctgtccctg tactggagcc acgaggccct gttccagaag aagactctgc 1201 aggccctgga attccacact gtgcccttcc agttgctggc ccggtacaaa ggcctgaacc 1261 tcaccgagga tacctacaag ccccggattt acacctcgcc cacctggagt gcctttgtga 1321 cagacagttc ctggagtgca cggaagtcac aactggtcta tcagtccaga cgggggcctt 1381 tggtcaaata ttcttctgat tacttccaag ccccctctga ctacagatac tacccctacc 1441 agtccttcca gactccacaa caccccagct tcctcttcca ggacaagagg gtgtcctggt 1501 ccctggtcta cctccccacc atccagagct gctggaacta cggcttctcc tgctccTCGG 1561 ACGAGCTCCC TGTCCTGGGC CTCACCAAGT CTGGCGGCTC AGATCGCACC ATTGCCTACG 1621 AAAACAAAGC CCTGATGCTC TGCGAAGGGC TCTTCGTGGC AGACGTCACC GATTTCGAGG 1681 GCTGGAAGGC TGCGATTCCC AGTGCCCTGG ACACCAACAG CTCGAAGAGC ACCTCCTCCT 1741 TCCCCTGCCC GGCAGGGCAC TTCAACGGCT TCCGCACGGT CATCCGCCCC TTCTACCTGA 1801 CCAACTCCTC AGGTGTGGAC TACCCAACTT TCTTGTACAA AGTGGTTGAT ATCGGTAAGC 1861 CTATCCCTAA CCCTCTCCTC GGTCTCGATT CTACGTAGTA ATGAACTAGT CCGTAACTTG 1921 AAAGTATTTC GATTTCTTGG CTTTATATAT CTTGTGGAAA GGACGACCCC ATACTGATTC 1981 ACGAGTTCGT ACGCGTTAAG TCgacaatca acctctggat tacaaaattt gtgaaagatt