Construct: ORF TRCN0000469539

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF008742.1_s317c1
Derived from:
ccsbBroadEn_02000
DNA Barcode:
ACTGTAGCCCCAGCGCATATGCTA
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SNX4 (8723)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000469539
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 8723 SNX4 sorting nexin 4 NM_003794.4 100% 100%
2 human 8723 SNX4 sorting nexin 4 XM_017007414.2 93.3% 93.3% 787_882del
3 human 8723 SNX4 sorting nexin 4 NR_073435.2 48.8% 1_30del;170_171ins122;1259_2390del
4 mouse 69150 Snx4 sorting nexin 4 NM_080557.2 89% 94% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1416
ORF length:
1350
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgga gcaggcacct ccggaccccg agcggcagct ccagccggcg cccttggagc
121cgctgggctc cccagacgct gggctggggg ctgcggtcgg caaggaagcg gagggggccg
181gagaagagag ctctggggtc gacacgatga cacacaataa tttttggttg aagaagatag
241aaatcagtgt ttcagaagca gaaaaacgaa ctggaagaaa tgccatgaac atgcaagaaa
301catatactgc ttacctcatt gaaacaaggt cagttgaaca taccgatggt cagagtgtcc
361taacagactc actatggcgg cgatatagtg aatttgagtt gttgagaagc taccttttag
421tttactatcc acatattgtt gtgccacctc tgccagaaaa acgggcagaa tttgtttggc
481ataaactctc tgctgacaac atggatccag attttgtgga gaggcgacgg attggtttag
541aaaactttct cttgaggatt gcttcacatc ccatcctttg tagagacaaa atcttctatc
601tgtttttaac acaggaaggt aactggaagg agactgtgaa tgaaactggg tttcagctga
661aggcagactc caggttaaaa gcgcttaatg caacattcag agtgaaaaac ccagacaaga
721gatttactga ccttaagcac tatagtgatg aactgcagtc tgtcatctca catcttcttc
781gagtcagagc tagagtagca gatcgactct atggtgtata taaagtacat gggaattatg
841gtcgagtttt cagtgaatgg agtgccatag aaaaagaaat gggtgatgga ctgcagagtg
901ctggtcatca tatggatgtg tatgcatcTT CTATTGATGA TATTTTGGAA GATGAAGAAC
961ATTATGCAGA TCAGTTAAAA GAGTATCTTT TTTATGCAGA AGCATTGCGG GCTGTGTGCA
1021GGAAACATGA ACTTATGCAG TATGACTTGG AGATGGCTGC TCAGGACTTA GCATCCAAGA
1081AGCAGCAGTG TGAGGAACTG GTAACTGGGA CTGTGAGAAC ATTCTCTTTG AAGGGAATGA
1141CTACCAAGCT CTTTGGTCAA GAAACTCCAG AGCAGAGAGA AGCCAGAATA AAGGTGCTAG
1201AAGAACAAAT AAATGAAGGA GAACAACAGC TAAAGTCTAA AAATCTGGAA GGCAGAGAAT
1261TTGTGAAAAA CGCATGGGCT GATATTGAAC GCTTCAAAGA ACAAAAGAAC CGAGACTTAA
1321AGGAGGCCCT CATAAGCTAT GCAGTCATGC AGATCAGTAT GTGCAAAAAG GGAATTCAAG
1381TTTGGACCAA TGCTAAGGAA TGCTTTAGCA AGATGTACCC AACTTTCTTG TACAAAGTGG
1441TTGATATCGG TAAGCCTATC CCTAACCCTC TCCTCGGTCT CGATTCTACG TAGTAATGAA
1501CTAGTCCGTA ACTTGAAAGT ATTTCGATTT CTTGGCTTTA TATATCTTGT GGAAAGGACG
1561AACTGTAGCC CCAGCGCATA TGCTAACGCG TTAAGTCgac aatcaacctc tggattacaa
1621aatttgtgaa agatt

Download FASTA (ORF) (Full)

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