Construct: ORF TRCN0000469581
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF009449.1_s317c1
- Derived from:
- ccsbBroadEn_11693
- DNA Barcode:
- TGTGTAATGGACCCAGCGTGCCCC
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ATP11B (23200)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000469581
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 23200 | ATP11B | ATPase phospholipid transpo... | XM_017006008.1 | 11.8% | 11.2% | (many diffs) |
| 2 | human | 23200 | ATP11B | ATPase phospholipid transpo... | XM_011512597.2 | 10.6% | 10.1% | (many diffs) |
| 3 | human | 23200 | ATP11B | ATPase phospholipid transpo... | XM_005247243.2 | 10.2% | 9.7% | (many diffs) |
| 4 | human | 23200 | ATP11B | ATPase phospholipid transpo... | NM_014616.3 | 8.6% | 8.2% | (many diffs) |
| 5 | human | 23200 | ATP11B | ATPase phospholipid transpo... | XM_005247241.2 | 6.9% | 4.8% | 1_3174del;3317_3402del;3507_3508ins65 |
| 6 | human | 23200 | ATP11B | ATPase phospholipid transpo... | XR_001740068.1 | 3.5% | (many diffs) | |
| 7 | human | 23200 | ATP11B | ATPase phospholipid transpo... | XR_001740067.1 | 3.4% | (many diffs) | |
| 8 | human | 23200 | ATP11B | ATPase phospholipid transpo... | XR_001740066.1 | 3.4% | (many diffs) | |
| 9 | mouse | 76295 | Atp11b | ATPase, class VI, type 11B | XM_006535568.2 | 5.8% | 4.4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 378
- ORF length:
- 312
- Sequence:
-
1 TCTTCCATTT CAGGTGTCGT GAGGCTAGCA TCGATTGATC AACAAGTTTG TACAAAAAAG 61 TTGGCATGTA TTTTGTGTTT ATTCAGCTCC TGTCAAGTGG TTCTGCTTGG TTTGCCATAA 121 TCCTCATGGT TGTTACATGT CTATTTCTTG ATATCATAAA GAAGGTCTTT GACCGACACC 181 TCCACCCTAC AAGTACTGAA AAGGCACAGC TTACTGAAAC AAATGCAGGT ATCAAGTGCT 241 TGGACTCCAT GTGCTGTTTC CCGGAAGGAG AAGCAGCGTG TGCATCTGTT GGAAGAATGC 301 TGGAACGAGT TATAGGAAGA TGTAGTCCAA CCCACATCAG CAGGTGTGAA ATCTCTCTAA 361 GTAGCCTTTG CTGCAGATGC CCAACTTTCT TGTACAAAGT GGTTGATATC GGTAAGCCTA 421 TCCCTAACCC TCTCCTCGGT CTCGATTCTA CGTAGTAATG AACTAGTCCG TAACTTGAAA 481 GTATTTCGAT TTCTTGGCTT TATATATCTT GTGGAAAGGA CGATGTGTAA TGGACCCAGC 541 GTGCCCCACG CGTTAAGTCg acaatcaacc tctggattac aaaatttgtg aaagatt