Construct: ORF TRCN0000470075

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF006224.1_s317c1
Derived from:
ccsbBroadEn_01320
DNA Barcode:
CCTTTATGTCATGGCAGCATGCGC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PSMD4 (5710)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000470075
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 5710 PSMD4 proteasome 26S subunit, non... NM_002810.3 100% 100%
2 human 5710 PSMD4 proteasome 26S subunit, non... NM_001330692.2 99.2% 99.2% 762_770delAGGTGAAAG
3 human 266971 PIPSL PIP5K1A and PSMD4 like (pse... NR_002319.2 28.9% (many diffs)
4 mouse 19185 Psmd4 proteasome (prosome, macrop... NM_008951.2 90.1% 96% (many diffs)
5 mouse 19185 Psmd4 proteasome (prosome, macrop... NM_001282017.1 89.4% 95.2% (many diffs)
6 mouse 19185 Psmd4 proteasome (prosome, macrop... XM_006501137.2 63.8% 67.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1197
ORF length:
1131
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatggt gttggaaagc actatggtgt gtgtggacaa cagtgagtat atgcggaatg
121gagacttctt acccaccagg ctgcaggccc agcaggatgc tgtcaacata gtttgtcatt
181caaagacccg cagcaaccct gagaacaacg tgggccttat cacactggct aatgactgtg
241aagtgctgac cacactcacc ccagacactg gccgtatcct gtccaagcta catactgtcc
301aacccaaggg caagatcacc ttctgcacgg gcatccgcgt ggcccatctg gctctgaagc
361accgacaagg caagaatcac aagatgcgca tcattgcctt tgtgggaagc ccagtggagg
421acaatgagaa ggatctggtg aaactggcta aacgcctcaa gaaggagaaa gtaaatgttg
481acattatcaa ttttggggaa gaggaggtga acacagaaaa gctgacagcc tttgtaaaca
541cgttgaatgg caaagatgga accggttctc atctggtgac agtgcctcct gggcccagtt
601tggctgatgc tctcatcagt tctccgattt tggctggtga aggtggtgcc atgctgggtc
661ttggtgccag tgactttgaa tttggagtag atcccagtgc tgatcctgag ctggccttgg
721cccTTCGTGT ATCTATGGAA GAGCAGCGGC AGCGGCAGGA GGAGGAGGCC CGGCGGGCAG
781CTGCAGCTTC TGCTGCTGAG GCCGGGATTG CTACGACTGG GACTGAAGAC TCAGACGATG
841CCCTGCTGAA GATGACCATC AGCCAGCAAG AGTTTGGCCG CACTGGGCTT CCTGACCTAA
901GCAGTATGAC TGAGGAAGAG CAGATTGCTT ATGCCATGCA GATGTCCCTG CAGGGAGCAG
961AGTTTGGCCA GGCGGAATCA GCAGACATTG ATGCCAGCTC AGCTATGGAC ACATCTGAGC
1021CAGCCAAGGA GGAGGATGAT TACGACGTGA TGCAGGACCC CGAGTTCCTT CAGAGTGTCC
1081TAGAGAACCT CCCAGGTGTG GATCCCAACA ATGAAGCCAT TCGAAATGCT ATGGGCTCCC
1141TGGCCTCCCA GGCCACCAAG GACGGCAAGA AGGACAAGAA GGAGGAAGAC AAGAAGTGCC
1201CAACTTTCTT GTACAAAGTG GTTGATATCG GTAAGCCTAT CCCTAACCCT CTCCTCGGTC
1261TCGATTCTAC GTAGTAATGA ACTAGTCCGT AACTTGAAAG TATTTCGATT TCTTGGCTTT
1321ATATATCTTG TGGAAAGGAC GACCTTTATG TCATGGCAGC ATGCGCACGC GTTAAGTCga
1381caatcaacct ctggattaca aaatttgtga aagatt

Download FASTA (ORF) (Full)