Construct: ORF TRCN0000470117
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF000439.1_s317c1
- Derived from:
- ccsbBroadEn_02120
- DNA Barcode:
- CCCTCCCAGTGTTGACTGTATTCC
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- GCNT3 (9245)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000470117
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 9245 | GCNT3 | glucosaminyl (N-acetyl) tra... | NM_004751.3 | 100% | 100% |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1380
- ORF length:
- 1314
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatggt tcaatggaag agactctgcc agctgcatta cttgtgggct ctgggctgct 121 atatgctgct ggccactgtg gctctgaaac tttctttcag gttgaagtgt gactctgacc 181 acttgggtct ggagtccagg gaatctcaaa gccagtactg taggaatatc ttgtataatt 241 tcctgaaact tccagcaaag aggtctatca actgttcagg ggtcacccga ggggaccaag 301 aggcagtgct tcaggctatt ctgaataacc tggaggtcaa gaagaagcga gagcctttca 361 cagacaccca ctacctctcc ctcaccagag actgtgagca cttcaaggct gaaaggaagt 421 tcatacagtt cccactgagc aaagaagagg tggagttccc tattgcatac tctatggtga 481 ttcatgagaa gattgaaaac tttgaaaggc tactgcgagc tgtgtatgcc cctcagaaca 541 tatactgtgt ccatgtggat gagaagtccc cagaaacttt caaagaggcg gtcaaagcaa 601 ttatttcttg cttcccaaat gtcttcatag ccagtaagct ggttcgggtg gtttatgcct 661 cctggtccag ggtgcaagct gacctcaact gcatggaaga cttgctccag agctcagtgc 721 cgtggaaata cttcctgaat acatgtggga cggactttcc tataaagagc aatgcagaga 781 tggtccaggc tctcaagatg ttgaatggga ggaatagcat ggagtcagag gtacctccta 841 agcacaaaga aacccgctgg aaatatcact ttgaggtagt gagagacaca ttacacctaa 901 ccaacaagaa gaaggatcct cccccTTATA ATTTAACTAT GTTTACAGGG AATGCGTACA 961 TTGTGGCTTC CCGAGATTTC GTCCAACATG TTTTGAAGAA CCCTAAATCC CAACAACTGA 1021 TTGAATGGGT AAAAGACACT TATAGCCCAG ATGAACACCT CTGGGCCACC CTTCAGCGTG 1081 CACGGTGGAT GCCTGGCTCT GTTCCCAACC ACCCCAAGTA CGACATCTCA GACATGACTT 1141 CTATTGCCAG GCTGGTCAAG TGGCAGGGTC ATGAGGGAGA CATCGATAAG GGTGCTCCTT 1201 ATGCTCCCTG CTCTGGAATC CACCAGCGGG CTATCTGCGT TTATGGGGCT GGGGACTTGA 1261 ATTGGATGCT TCAAAACCAT CACCTGTTGG CCAACAAGTT TGACCCAAAG GTAGATGATA 1321 ATGCTCTTCA GTGCTTAGAA GAATACCTAC GTTATAAGGC CATCTATGGG ACTGAACTTT 1381 GCCCAACTTT CTTGTACAAA GTGGTTGATA TCGGTAAGCC TATCCCTAAC CCTCTCCTCG 1441 GTCTCGATTC TACGTAGTAA TGAACTAGTC CGTAATTTGA AAGTATTTCG ATTTCTTGGC 1501 TTTATATATC TTGTGGAAAG GACGACCCTC CCAGTGTTGA CTGTATTCCA CGCGTTAAGT 1561 Cgacaatcaa cctctggatt acaaaatttg tgaaagatt