Construct: ORF TRCN0000471375
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF002665.1_s317c1
- Derived from:
- ccsbBroadEn_03839
- DNA Barcode:
- GGAGCCGGTTCTAATCGTCATGGT
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZBTB26 (57684)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000471375
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 57684 | ZBTB26 | zinc finger and BTB domain ... | NM_001304363.2 | 100% | 100% | |
| 2 | human | 57684 | ZBTB26 | zinc finger and BTB domain ... | NM_001304364.1 | 100% | 100% | |
| 3 | human | 57684 | ZBTB26 | zinc finger and BTB domain ... | NM_020924.4 | 100% | 100% | |
| 4 | mouse | 320633 | Zbtb26 | zinc finger and BTB domain ... | NM_199025.3 | 95.3% | 95.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1389
- ORF length:
- 1323
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatgtc tgaaagatca gatctccttc acttcaagtt tgaaaattat ggagattcaa 121 tgttacaaaa aatgaacaaa ttaagagaag agaataaatt ttgtgatgtt acagttctca 181 tagatgatat tgaggtacag ggacataaaa ttgtgtttgc tgcaggttcc cccttcttaa 241 gagaccaatt tttactgaat gattccagag aggtgaaaat ctccatatta cagagttccg 301 aagtggggag acaattgctc ttatcctgtt atagtggtgt gctggaattc cctgagatgg 361 aactggtaaa ttacttgact gctgcaagtt ttcttcagat gagccacatt gtagaacggt 421 gcacacaggc cctgtggaag tttataaagc caaaacaacc aatggatagt aaagagggat 481 gtgaaccaca gagtgcttct ccccagtcaa aagaacagca gggagatgcc agaggctccc 541 caaagcagga ctcaccttgt attcatccat ctgaagacag tatggatatg gaggacagtg 601 atattcagat tgttaaggta gaatctattg gggatgtatc agaggttaga agtaaaaaag 661 atcagaacca gtttatttct tctgaaccca ctgctttaca ttcatcagag ccccagcact 721 ccctgataaa ttcaactgtg gaaaacagag taagtgaaat agaacaaaac catctccaca 781 attatgccct ttcttataca ggcagtgata acatcatcat ggcctcaaaa gatgtctttg 841 gccctaatat tcgaggtgta gacaaaggcc tacagtggca tcaccagtgc ccaaagtgta 901 ccagggtgtt tcgtcacctg gagaactacg ccaaccattt aaaaatgcac aaactcttta 961 tgtgtctacT CTGCGGCAAG ACTTTCACTC AGAAAGGCAA CCTTCATCGA CACATGCGTG 1021 TGCATGCCGG AATTAAACCT TTCCAGTGTA AAATCTGTGG GAAAACCTTT TCTCAGAAGT 1081 GTTCCTTACA GGATCATCTT AACCTTCACA GTGGAGATAA GCCCCATAAA TGTAACTATT 1141 GTGATATGGT TTTTGCACAT AAACCAGTTT TGAGGAAACA CCTTAAACAG CTGCATGGCA 1201 AAAACAGCTT TGATAATGCC AATGAGAGAA ATGTACAAGA CCTCACAGTG GATTTTGATT 1261 CTTTTGCATG TACAACAGTC ACAGACTCTA AAGGGTGTCA GCCACAACCC GATGCAACAC 1321 AGGTCCTGGA TGCAGGTAAA CTGGCCCAAG CTGTCCTGAA CTTAAGAAAT GATAGTACTT 1381 GTGTGAATTG CCCAACTTTC TTGTACAAAG TGGTTGATAT CGGTAAGCCT ATCCCTAACC 1441 CTCTCCTCGG TCTCGATTCT ACGTAGTAAT GAACTAGTCC GTAACTTGAA AGTATTTCGA 1501 TTTCTTGGCT TTATATATCT TGTGGAAAGG ACGAGGAGCC GGTTCTAATC GTCATGGTAC 1561 GCGTTAAGTC gacaatcaac ctctggatta caaaatttgt gaaagatt