Construct: ORF TRCN0000471720
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF012966.1_s317c1
- Derived from:
- ccsbBroadEn_09992
- DNA Barcode:
- GTAACCCACCATATGGGCGAGACG
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- VN1R2 (317701)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000471720
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
---|---|---|---|---|---|---|---|---|
1 | human | 317701 | VN1R2 | vomeronasal 1 receptor 2 | NM_173856.2 | 99.9% | 99.7% | 112T>C |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1254
- ORF length:
- 1185
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcaccat gactcacact ctttacccta ccccttttgc tttgtatcca ataaatatca 121 gcgcagcctg gcatttgggg ccactaccag tctcctgctt tgtatccaat aaatatcagc 181 gcagcctggc attcggggcc actaccggtc tccgcgtctt ggtggtagtg gtcccccaga 241 cacagctgtc ttttctttca tctctttgtc ttgtgtcttt atttctacac tctcttgtct 301 ctgcacacgg agagaaaccc accaaacctg tggggctgga ccctacacta ttccaggtag 361 ttgttggaat cctggggaat ttttcactct tatattatta tatgttcctt tactttaggg 421 gatacaagcc aagatccaca gatttgattc tcaggcacct gactgtagct gactccttgg 481 ttatcctatc taaaagaatc ccagagacca tggcaacttt tgggttgaaa cattttgaca 541 attattttgg atgcaaattt cttttgtatg cacacagggt aggcaggggt gtgtccattg 601 gaagcacctg cctcttgagt gtcttccagg tgatcaccat caaccctagg aactccaggt 661 gggcagagat gaaagtaaaa gccccgacat acattggtct ctccaatatc ctgtgctggg 721 ccttccacat gctggtaaat gccatttttc ctatttatac aactggcaaa tggagcaaca 781 acaacatcac aaagaaagga gatttgggat attgttctgc cccacttagt gatgaagtca 841 caaagtcagt atatgcagca ttgacatcct tccatgatgt tttgtgtctg gggctcatgc 901 TCTGGGCCAG CAGCTCCATC GTTTTGGTCT TGTACAGGCA CAAACAGCAG GTACAACACA 961 TCTGTAGGAA CAATCTCTAC CCCAACTCTT CTCCTGGGAA CAGAGCCATC CAAAGCATCC 1021 TTGCATTGGT GAGCACCTTT GCATTATGTT ACGCCCTTTC CTTCATCACC TACGTTTATT 1081 TAGCTCTCTT CGATAATTCC AGTTGGTGGC TAGTGAACAC TGCTGCACTA ATCATTGCCT 1141 GTTTTCCAAC TATTAGCCCT TTTGTTCTCA TGTGCCGTGA CCCCAGCAGA TCCAGGCTCT 1201 GCAGTATCTG CTGCAGAAGA AATAGACGAT TCTTTCATGA TTTCAGGAAA ATGTTGCCAA 1261 CTTTCTTGTA CAAAGTGGTT GATATCGGTA AGCCTATCCC TAACCCTCTC CTCGGTCTCG 1321 ATTCTACGTA GTAATGAACT AGTCCGTAAC TTGAAAGTAT TTCGATTTCT TGCTTTATAT 1381 ATCTTGTGGA AAGGACGAGT AACCCACCAT ATGGGCGAGA CGACGCGTTA AGTCgacaat 1441 caacctctgg attacaaaat ttgtgaaaga tt