Construct: ORF TRCN0000471802
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF003774.1_s317c1
- Derived from:
- ccsbBroadEn_07412
- DNA Barcode:
- TTTGAGCCGTTACACCACGCTAGG
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZRANB2 (9406)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000471802
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 9406 | ZRANB2 | zinc finger RANBP2-type con... | NM_005455.5 | 99.8% | 99.6% | 619C>G |
| 2 | human | 9406 | ZRANB2 | zinc finger RANBP2-type con... | NM_203350.3 | 94.3% | 93.9% | (many diffs) |
| 3 | mouse | 53861 | Zranb2 | zinc finger, RAN-binding do... | XM_017319646.1 | 91.9% | 96.8% | (many diffs) |
| 4 | mouse | 53861 | Zranb2 | zinc finger, RAN-binding do... | XM_017319647.1 | 91.9% | 96.8% | (many diffs) |
| 5 | mouse | 53861 | Zranb2 | zinc finger, RAN-binding do... | NM_017381.2 | 87.4% | 91.5% | (many diffs) |
| 6 | mouse | 53861 | Zranb2 | zinc finger, RAN-binding do... | XM_017319648.1 | 67.7% | 69.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1026
- ORF length:
- 960
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatgtc gaccaagaat ttccgagtca gtgacgggga ctggatttgc cctgacaaaa 121 aatgtggaaa tgtaaacttt gctagaagaa ccagctgtaa tcgatgtggt cgggagaaaa 181 caactgaggc caagatgatg aaagctgggg gcactgaaat aggaaagaca cttgcagaaa 241 agagccgagg cctatttagt gctaatgact ggcaatgtaa aacttgcagc aatgtgaatt 301 gggccagaag atcagagtgt aatatgtgta atactccaaa gtatgctaaa ttagaagaaa 361 gaacaggata tggtggtggt tttaatgaaa gagaaaatgt tgaatatata gaaagagaag 421 aatctgatgg tgaatatgat gagtttggac gtaaaaagaa aaaatacaga gggaaagcag 481 ttggtcctgc atctatatta aaggaagttg aagataaaga atcagaggga gaagaagagg 541 atgaggatga agatctttct aaatATAAGT TAGATGAGGA TGAGGATGAA GATGACGCTG 601 ATCTCTCAAA ATATAATCTT GATGCCAGTG AAGAAGAAGA TAGTAATAAA AAGAAATCTA 661 ATAGACGAAG TCGCTCAAAG TCTGGATCTT CACATTCACG ATCTTCATCA CGCTCATCCT 721 CCCCCTCAAG TTCAAGGTCT AGGTCCAGGT CCCGTTCAAG AAGTTCTTCC AGTTCGCAGT 781 CAAGATCTCG TTCCAGTTCC AGAGAACGTT CGAGATCTCG TGGGTCGAAA TCAAGATCCA 841 GCTCCAGGTC CCACAGGGGC TCTTCTTCCC CACGAAAAAG ATCTTATTCA AGTTCATCAT 901 CTTCTCCTGA GAGGAACAGA AAGAGAAGTC GTTCTAGATC TTCTTCATCT GGTGATCGCA 961 AAAAAAGACG AACAAGATCA CGGTCACCCG AAAGCCAGGT GATTGGTGAA AACACTAAAC 1021 AACCCTGCCC AACTTTCTTG TACAAAGTGG TTGATATCGG TAAGCCTATC CCTAACCCTC 1081 TCCTCGGTCT CGATTCTACG TAGTAATGAA CTAGTCCGTA ACTTGAAAGT ATTTCGATTT 1141 CTTGGCTTTA TATATCTTGT GGAAAGGACG ATTTGAGCCG TTACACCACG CTAGGACGCG 1201 TTAAGTCgac aatcaacctc tggattacaa aatttgtgaa agatt