Construct: ORF TRCN0000471899

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF005807.1_s317c1
Derived from:
ccsbBroadEn_13697
DNA Barcode:
TAAGCCACCCATGAAGTATGTGTT
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
LOC441242 (441242)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000471899
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 102724014 LOC102724014 translation initiation fact... XM_024452502.1 60.5% 47.4% (many diffs)
2 human 102724052 LOC102724052 translation initiation fact... XM_024452503.1 60.5% 47.4% (many diffs)
3 human 441242 LOC441242 uncharacterized LOC441242 NR_038378.4 44.7% 1_897del;1356_1357ins43;1803_1978del
4 human 105379473 LOC105379473 uncharacterized LOC105379473 XM_011546043.2 25.1% 15.1% (many diffs)
5 human 105379474 LOC105379474 uncharacterized LOC105379474 XM_011546044.2 25.1% 15.1% (many diffs)
6 human 105379545 LOC105379545 uncharacterized LOC105379545 XM_011546243.2 25.1% 15.1% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1014
ORF length:
948
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgag agggccggac cagatggaaa ttcggggggg tccgtatctc ctgctcggtg
121aggtcgttgg acacagcgca cttggtgccc agcccgcgca ggctgccaat ggagatgccg
181atgagcttct ggagctgtcc gcactgctgc agccccgggc tggccggggc ccctgcgcca
241ccctcagcgg ccgctgcatc acccccgcca ccgccctcct tcttctctcc catcgcctcc
301gcgcgcagtg ccgccctatg caggccacag cggccgaggc agggagcccg gggctcgggc
361gcctaggcaa ggaacccccg agccgggaga gctggaccgg gagcgcccct cggcgctgcc
421cttgccagga cgccagtaga gctggcagcg gagtctgccg ctcccgccct cagagccgcg
481gcggcgggag cagaaagccg cggcggcaaa aagccgcggc gacgggggca aaaagccgcg
541gcggcgcagg caaaaagctt aGGCGGCGGG GGCAAAAAGC CGCGGCGGCG CAGGCAAAAA
601GCTTAGGCGG CGGGGGCAAA AAGCCGCGGC GGCAAAAATG CGCGGCGGCG GGGCAAAAAG
661CCGCGGCGGA AGAAAGCCGC CGGGGCGGGG GCAAAAAGCC GCGGCGGGGG GGACAAAAAG
721CAGTGGGAGC TGGGGCAAAA AAACCACAAA AAGCCGCGGC GGCGGGGACC AAAACGCCGC
781GGCGGCGGAG GCAAAAAGCT GCAAAAGCCG CGGTGTGGGG GCAGAAAGCC GCAGCGGGAG
841AAAGTCTCAC TCCAAATTCC CTTGCTTCAG TAAGCTTCTC TAGGCCAATG TTCCTTCGGC
901ATTACCCATT TTCTTCCTGT GAATGCAAAT CACATAAACA TGGAAGTACA TTTGACCATT
961TTAATTGTTT AACATTCCAT GTCACACGAC CTTCCACAAT AGAATCAATG TATTACCCAA
1021CTTTCTTGTA CAAAGTGGTT GATATCGGTA AGCCTATCCC TAACCCTCTC CTCGGTCTCG
1081ATTCTACGTA GTAATGAACT AGCCCGTAAC TTGAAAGTAT TTCGATTTCT TGGCTTTATA
1141TATCTTGTGG AAAGGACGAT AAGCCACCCA TGAAGTATGT GTTACGCGTT AAGTCgacaa
1201tcaacctctg gattacaaaa tttgtgaaag att

Download FASTA (ORF) (Full)