Construct: ORF TRCN0000472052

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF006766.1_s317c1
Derived from:
ccsbBroadEn_05984
DNA Barcode:
GTTCGGCCGTCATGTCCTGTCTTA
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CETP (1071)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000472052
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 1071 CETP cholesteryl ester transfer ... NM_000078.3 99.9% 99.7% 1264G>A
2 human 1071 CETP cholesteryl ester transfer ... NM_001286085.2 87.7% 87.6% 746_747ins180;1084G>A
3 human 1071 CETP cholesteryl ester transfer ... XM_006721124.3 52.3% 51.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1545
ORF length:
1479
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgct ggctgccaca gtcctgaccc tggccctgct gggcaatgcc catgcctgct
121ccaaaggcac ctcgcacgag gcaggcatcg tgtgccgcat caccaagcct gccctcctgg
181tgttgaacca cgagactgcc aaggtgatcc agaccgcctt ccagcgagcc agctacccag
241atatcacggg cgagaaggcc atgatgctcc ttggccaagt caagtatggg ttgcacaaca
301tccagatcag ccacttgtcc atcgccagca gccaggtgga gctggtggaa gccaagtcca
361ttgatgtctc cattcagaac gtgtctgtgg tcttcaaggg gaccctgaag tatggctaca
421ccactgcctg gtggctgggt attgatcagt ccattgactt cgagatcgac tctgccattg
481acctccagat caacacacag ctgacctgtg actctggtag agtgcggacc gatgcccctg
541actgctacct gtctttccat aagctgctcc tgcatctcca aggggagcga gagcctgggt
601ggatcaagca gctgttcaca aatttcatct ccttcaccct gaagctggtc ctgaagggac
661agatctgcaa agagatcaac gtcatctcta acatcatggc cgattttgtc cagacaaggg
721ctgccagcat cctttcagat ggagacattg gggtggacat ttccctgaca ggtgatcccg
781tcatcacagc ctcctacctg gagtcccatc acaagggtca tttcatctac aagaatgtct
841cagaggacct ccccctcccc accttctcgc ccacactgct gggggactcc cgcatgctgt
901acttctggtt ctctgagcga gtcttccact cgctggccaa ggtagctttc caggatggcc
961gcctcatgct cagcctgatg ggagacgagt tcaaggcagt gctggagacc tggggcttca
1021acaccaacca ggaaaTCTTC CAAGAGGTTG TCGGCGGCTT CCCCAGCCAG GCCCAAGTCA
1081CCGTCCACTG CCTCAAGATG CCCAAGATCT CCTGCCAAAA CAAGGGAGTC GTGGTCAATT
1141CTTCAGTGAT GGTGAAATTC CTCTTTCCAC GCCCAGACCA GCAACATTCT GTAGCTTACA
1201CATTTGAAGA GGATATCGTG ACTACCGTCC AGGCCTCCTA TTCTAAGAAA AAGCTCTTCT
1261TAAGCCTCTT GGATTTCCAG ATTACACCAA AGACTGTTTC CAACTTGACT GAGAGCAGCT
1321CCGAGTCCAT CCAGAGCTTC CTGCAGTCAA TGATCACCGC TGTGGGCATC CCTGAGGTCA
1381TGTCTCGGCT CGAGGTAGTG TTTACAGCCC TCATGAACAG CAAAGGCGTG AGCCTCTTCG
1441ACATCATCAA CCCTGAGATT ATCACTCGAG ATGGCTTCCT GCTGCTGCAG ATGGACTTTG
1501GCTTCCCTGA GCACCTGCTG GTGGATTTCC TCCAGAGCTT GAGCTACCCA ACTTTCTTGT
1561ACAAAGTGGT TGATATCGGT AAGCCTATCC CTAACCCTCT CCTCGGTCTC GATTCTACGT
1621AGTAATGAAC TAGTCCGTAA CTTGAAAGTA TTTCGATTTC TTGGCTTTAT ATATCTTGTG
1681GAAAGGACGA GTTCGGCCGT CATGTCCTGT CTTAACGCGT TAAGTCgaca atcaacctct
1741ggattacaaa atttgtgaaa gatt

Download FASTA (ORF) (Full)