Construct: ORF TRCN0000472441

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF000119.1_s317c1
Derived from:
ccsbBroadEn_09394
DNA Barcode:
AGCCCATGGCTATGCCAAAGTGTT
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PALM2 (114299)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000472441
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 445815 PALM2AKAP2 PALM2 and AKAP2 fusion NM_001037293.2 99.8% 99.7% 305A>G;459T>C
2 human 445815 PALM2AKAP2 PALM2 and AKAP2 fusion NM_053016.6 91.1% 91% (many diffs)
3 mouse 242481 Palm2 paralemmin 2 NM_172868.3 88.8% 91% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1203
ORF length:
1137
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgga gatggcagag gcggaattgc acaaggaaag gctgcaagcc atagcagaaa
121aaagaaagag gcagactgaa atagaaggca agcgacaaca gcttgacgag cagatacttc
181tgctgcagca ttccaagtcc aaagtgcttc gggagaaatg gctgctgcag ggcatacccg
241ctggaactgc cgaagaggag gaagccagga ggcggcagtc tgaagaggat gagttcagag
301tcaagcaact tgaagataac attcagaggc tggagcaaga aatacaaacg ctagaaagtg
361aagagtcccg gatatctgcc aaagagcaaa tcatcctaga gaaactgaag gaaacagaaa
421aatccttcaa ggactttcag aagggtttct ccagtacgga tggagctgtg tacgccatgg
481aaattaatgt ggagaaagac aaacaaacag gagagaccaa gatcctctct acatctacca
541ttggcccaga gggggtccat cagaaaggag tcaaagtcta tgatgatggt accaaagtag
601tgtatgaggt gcgctcagga ggcaccgtag tagaaaatgg agtgcacaaa ttaagcacaa
661aggatgtaga agagcttatt cagaaggctg gacaatcaag cttaggagga gggcacgtgt
721ctgaaaggac tgtgattgca gatgggagcc TCAGCCATCC CAAGGAACAC ATGCTCTGCA
781AAGAAGCTAA GTTAGAAATG GTACATAAGT CTAGGAAAGA CCATTCTTCC GGGAACCCAG
841GGCAGCAGGC CCAAGCCCCC AGCGCTGCAG GGCCGGAGGC AAACTTGGAT CAGCCCGTCA
901CCATGATTTT TATGGGCTAC CAAAATATCG AGGATGAAGA GGAGACGAAA AAGGTGCTAG
961GCTATGATGA AACCATCAAG GCTGAATTGG TCCTCATTGA TGAAGATGAT GAGAAGTCAT
1021TGAGGGAGAA GACAGTGACG GACGTGTCCA CTATTGACGG GAACGCGGCT GAGCTTGTGT
1081CCGGGAGGCC GGTCTCAGAC ACCACAGAGC CCTCATCCCC AGAAGGGAAG GAAGAGAGCC
1141TAGCTACAGA GCCAGCCCCA GGTACCCAAA AGAAAAAGCG CTGTCAATGC TGTGTTGTCA
1201TGTGCCCAAC TTTCTTGTAC AAAGTGGTTG ATATCGGTAA GCCTATCCCT AACCCTCTCC
1261TCGGTCTCGA TTCTACGTAG TAATGAACTA GTCCGTAACT TGAAAGTATT TCGATTTCTT
1321GGCTTTATAT ATCTTGTGGA AAGGACGAAG CCCATGGCTA TGCCAAAGTG TTACGCGTTA
1381AGTCgacaat caacctctgg attacaaaat ttgtgaaaga tt

Download FASTA (ORF) (Full)