Construct: ORF TRCN0000472669
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF018829.3_s317c1
- Derived from:
- ccsbBroadEn_15043
- DNA Barcode:
- ATAGATCGCGATGGCATTGAATTA
- Epitope Tag:
- V5 (not translated due to prior stop codon)
- Notes:
- Early stop codon detected
Originally Annotated References:
- Gene:
- NMRK2 (27231)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000472669
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 27231 | NMRK2 | nicotinamide riboside kinase 2 | NM_170678.2 | 85.7% | 19.3% | (many diffs) |
| 2 | human | 27231 | NMRK2 | nicotinamide riboside kinase 2 | NM_001289117.1 | 84% | 19% | (many diffs) |
| 3 | human | 27231 | NMRK2 | nicotinamide riboside kinase 2 | XM_024451452.1 | 76.1% | 21.1% | (many diffs) |
| 4 | human | 27231 | NMRK2 | nicotinamide riboside kinase 2 | XM_006722725.3 | 74.7% | 20.7% | (many diffs) |
| 5 | human | 27231 | NMRK2 | nicotinamide riboside kinase 2 | XM_017026597.1 | 51.8% | 27.6% | (many diffs) |
| 6 | human | 27231 | NMRK2 | nicotinamide riboside kinase 2 | XM_006722726.3 | 50.8% | 26.9% | (many diffs) |
| 7 | human | 27231 | NMRK2 | nicotinamide riboside kinase 2 | NR_110316.1 | 47.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 489
- ORF length:
- 420
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcaccat gaanntcatn gtgggcancn nagncatgan caacggcggc aagaccacgc 121 tgaccaacag cctgctcaga gccctgccca actgctnngt nntcnancag gatgacttct 181 tcaagcccca agaccaaata gcagttgggg aagacggctt naancanngg gacgtgctga 241 tttctttttc agcacttttt actgantcnc tggncatgna tgatgttccn gccannctgn 301 acaccgtgca gaagtcccca cgaatggtgc ctggctnngn anctgcngna nnngtntncc 361 cnngcancac nnggncngtc ttcaccacgt ncagccagag gccTCGGACA CCCACATCCT 421 CCTCCTGGAA GGCTTCCTGC TCTACAGCTA CAAGCCCCTG GTGGACTTGT ACAGCCGCCG 481 GTACTTCCTG ACCGTCCCGT ATGAAGAGTG CAAGTGGAGG AGAAGTACCC GCAACTACAC 541 AGTCCCTGAT CCCCCCGGCC TCTTCGATGG CCACGTGTGG CCCATGTACC AGAAGTATAG 601 GCAGGAGATG GAGGCCAACG GTGTGGAAGT GGTCTACCTG GACGGCATGA AGTCCCGAGA 661 GGAGCTCTTC CGTGAAGTCC TGGAAGACAT TCAGAACTCG CTGCTGAACC GCTCCCAGGA 721 ATCAGCCCCC TCCCCGGCTC GCCCAGCCAG GACACAGGGA CCCGGACGCG GATGCGGCCA 781 CAGAACGGCC AGGCCTGCAG CGTCCCAGCA GGACAGCATG TTGCCAACTT TCTTGTACAA 841 AGTGGTTGAT ATCGGTAAGC CTATCCCTAA CCCTCTCCTC GGTCTCGATT CTACGTAGTA 901 ATGAACTAGT CCGTAACTTG AAAGTATTTC GATTTCTTGG CTTTATATAT CTTGTGGAAA 961 GGACGAATAG ATCGCGATGG CATTGAATTA ACGCGTTAAG TCgacaatca acctctggat 1021 tacaaaattt gtgaaagatt