Construct: ORF TRCN0000473160

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF007340.1_s317c1
Derived from:
ccsbBroadEn_13479
DNA Barcode:
TTAACAGCTGGCCGCCTCCTTGCA
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CATSPERD (257062)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000473160
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 257062 CATSPERD cation channel sperm associ... XM_011527892.1 85.6% 85.5% 372C>G;743_940del;1366C>G
2 human 257062 CATSPERD cation channel sperm associ... XM_011527891.1 76.3% 76.2% (many diffs)
3 human 257062 CATSPERD cation channel sperm associ... XM_017026566.2 54.8% 54.8% (many diffs)
4 human 257062 CATSPERD cation channel sperm associ... XM_017026565.1 50.4% 50.3% (many diffs)
5 human 257062 CATSPERD cation channel sperm associ... NM_152784.4 49.9% 49.8% 1_1197del;1569C>G;2365C>G
6 human 257062 CATSPERD cation channel sperm associ... XM_017026564.2 47.6% 47.6% (many diffs)
7 human 257062 CATSPERD cation channel sperm associ... XM_011527886.3 47% 47% (many diffs)
8 human 257062 CATSPERD cation channel sperm associ... XM_011527885.3 46.1% 46% (many diffs)
9 human 257062 CATSPERD cation channel sperm associ... XM_011527887.3 41.1% 41% (many diffs)
10 human 257062 CATSPERD cation channel sperm associ... XM_011527888.3 31.2% 31% (many diffs)
11 human 257062 CATSPERD cation channel sperm associ... XM_011527889.3 23.6% 23.6% (many diffs)
12 human 257062 CATSPERD cation channel sperm associ... XM_011527890.3 18.4% 18.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1263
ORF length:
1197
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgta taccattgac atgcacagcc agctggaatt gactgcttcg ttgatacccc
121agccaggcac atccctgatt cctctggtga tggtgagcaa cccccactcc ctggggttcc
181aggccacctt ctacgagaac ggttacacat cagatgggaa caccaagtac aaactggata
241ttttcctaaa acagcagcag cactggggca ggaccgactc caacttcact tccagtttaa
301agaaagccac catgtctacc ttaactgtgg acatagcaaa caaggaaatt tcatgtgtgg
361atatcaagcc actgtcgaca ctgatttcag ttggctgcga cctggataaa aagatcgtca
421tccagaacaa agtttcggcc tgttccatgg gcatcctgga ccccttgacc ctgcaagaca
481attacagctt catcatcgag aaggaattct acgaccccgg cttccagggg cagcagtcct
541ccgaggacct gcacgtgttt tactcctacc agcagctggg ctgtcctctc ctcgtctact
601atgacaccct atggaagccc gtggtggagc tgtggcgaaa agacagtttc caggaggtca
661tcgacgccga gtatgtgtta ctggaggtga acgggcagtt ctcatactcc tattccctga
721cggcccagtc ggccatgtgt accTCCCAGC CGCAGAACTG GACCACCATG ATAAAGGAAT
781TCGGGGGGCC CTTCTTCTGG AACAGAGAGA ACTATGTGAG CTGCCACGAC CCCAACAACA
841ATGCCCCTTT GAGGTGGCCA GACGTCCAGT ATCAGATCTT GGGCGGCCGG ACAGCAAACC
901AGATCATTTT CGGCCACAAT GGCTTTTATG TCTTCTACAT TTCGATCGTG GATCCGTACT
961ACAGCTACTG TCAACTGGAG ACCATCTTTA GCATCTACGT GTATGGAGCA TTCCCCGTGC
1021AGCTGGTCTC TGCTGGAGTC GTCATCCTAC TGATCATCTC CAGCATCCTG GGGTCCGTTT
1081GGCTGGCCTA CAAGACCCCC AAGCTGCTAC GCACAGCACG CGGCCGCAGG ATCAAGAAGT
1141GTGCGACACA GCTGTGTAGG AGATGCAAGA CGGTCTGCCA GTTCAGGGCC TCAGCCACAG
1201CCAGGGCAGG CACAGAGCCC CCGGGACGCC ACGGCACTCC TCACGGAGGC AGGTCTGACC
1261ACTGCCCAAC TTTCTTGTAC AAAGTGGTTG ATATCGGTAA GCCTATCCCT AACCCTCTCC
1321TCGGTCTCGA TTCTACGTAG TAATGAACTA GTCCGTAACT TGAAAGTATT TCGATTTCTT
1381GGCTTTATAT ATCTTGTGGA AAGGACGATT AACAGCTGGC CGCCTCCTTG CAACGCGTTA
1441AGTCgacaat caacctctgg attacaaaat ttgtgaaaga tt

Download FASTA (ORF) (Full)