Construct: ORF TRCN0000473380
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF008360.1_s317c1
- Derived from:
- ccsbBroadEn_02394
- DNA Barcode:
- TCGAAAGCACGCTGCGGAGCGTGA
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZNF267 (10308)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000473380
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 10308 | ZNF267 | zinc finger protein 267 | NM_003414.6 | 99.9% | 99.8% | 1049G>A |
| 2 | human | 10308 | ZNF267 | zinc finger protein 267 | NM_001265588.2 | 95.6% | 95.5% | 0_1ins96;953G>A |
| 3 | human | 10308 | ZNF267 | zinc finger protein 267 | NR_049749.2 | 67.2% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 2298
- ORF length:
- 2229
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcaccat gggactgttg acattcaggg atgtggccgt agaattctct ttggaggagt 121 gggaacacct ggaaccagct cagaagaatt tgtatcagga tgtgatgtta gaaaactaca 181 gaaacctggt ctctctgggt cttgttgtct ctaagccgga cctgatcacc tttttggaac 241 aaaggaaaga gccttggaat gtgaagagtg aggagacagt agccatccag ccagatgtgt 301 tttcgcatta taacaaggac ctgttgacag agcactgcac agaagcttca ttccaaaaag 361 tgatatcgag gagacatggg agctgtgatc ttgagaattt acatttaaga aaaaggtgga 421 aaagggagga gtgtgaaggg cacaatggat gttatgatga aaagactttt aaatatgatc 481 aatttgatga atcctctgtt gaaagtttgt ttcaccagca aatactttct tcttgtgcca 541 aaagctataa ctttgatcaa tataggaagg tctttactca ttcatcattg cttaatcaac 601 aagaggaaat agatatttgg ggaaaacatc acatatatga taaaacttca gtgttattta 661 ggcaggtctc tactctaaat agttaccgaa atgtttttat tggagagaaa aattatcatt 721 gcaataattc tgaaaaaacc ttgaaccaaa gctcaagccc taaaaatcat caggaaaatt 781 attttctaga aaaacaatac aaatgtaaag aatttgagga agtctttctt cagagtatgc 841 atgggcaaga gaaacaagaa cagtcttaca aatgtaataa atgtgtagaa gtttgtaccc 901 agtcattaaa acatattcaa catcagacca tccatatcag agaaaactca tatagctata 961 acaaatatga taaagatctt agtcagtcat caaatcttag aaagcagata atccataatg 1021 aagagaaacc atacaaatgt gaaaaatgtg gggatagctt aaaccatagt ttgcacctta 1081 ctcaacatca gatcattcct accgaagaga aaccctataa atggaaagaa tgtggcaagg 1141 tctttaacct taactgtagt ttatacctta ctaaacagca gcaaattgat actggagaaa 1201 acctttacaa atgtaaagca tgtagcaaat cttttactcg ttcctccaat cttattgtgc 1261 atcagagaat tcacactgga gagaaaccat acaaatgtaa agaatgtggc aaagcctttc 1321 gctgtagttc ataccttact aaacataagc gaattcatac tggagagaaa ccttataaat 1381 gtaaagaatg tggaaaagct tttaaccgta gttcatgcct tactcaacat cagacaactc 1441 atacaggaga aaaactttac aaatgtaaag tatgtagcaa atcttatgct cgttcttcaa 1501 atcttattat gcatcagaga gttcatactg gagagaagcc ttataaatgt aaagaatgtg 1561 gcaaagtctt tagccgtagt tcttgcctta ctcaacatcg gaaaattcat actggagaaa 1621 atctttacaa atgcaaagta tgtgctaaac cttttacttg tttctcaaat cttattgtgc 1681 atgagagaat tcatactgga gagaaaccct ataaatgtaa agaatgtggc aaagcctttc 1741 cttatagttc acaccttatt cgacatcatc gaattcatac tggagaaaaa ccatacaaat 1801 gtaaagcatg tagcaaatct tttagtgact cctcaggtct tactgtgcat cggcgaactc 1861 atactggaga gaaaccctat acatgtaaag aatgtggcaa agcctttagt tatagttcag 1921 atgttattca gcatcggaga attcatactg gccagagacc ctacaaatgt gaagaatgtg 1981 gcaaagcctt caactatagg tcatacctca ctacacatca gagaagtcat actggagaga 2041 gaccctacaa atgtgaagaa tgtggcaaag ccttcaactc taggtcatac ctcactacac 2101 atcggagaag acatactgga gagagaccct acaaatgtga tgaatgtggt aaagccttca 2161 gctataggtc atacctcact acacatcgga gaagtcatag tggagagaga ccctacaaat 2221 gtgaagaatg tggcaaagcc tttaactcTA GGTCATACCT CATTGCACAT CAGAGAAGTC 2281 ATACTAGAGA AAAACTTTTG CCAACTTTCT TGTACAAAGT GGTTGATATC GGTAAGCCTA 2341 TCCCTAACCC TCTCCTCGGT CTCGATTCTA CGTAGTAATG AACTAGTCCG TAACTTGAAA 2401 GTATTTCGAT TTCTTGGCTT TATATATCTT GTGGAAAGGA CGATCGAAAG CACGCTGCGG 2461 AGCGTGAACG CGTTAAGTCg acaatcaacc tctggattac aaaatttgtg aaagatt