Construct: ORF TRCN0000473664
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF015885.1_s317c1
- Derived from:
- ccsbBroadEn_10357
- DNA Barcode:
- CAGGGCCGATTTGCCGGCTTCGTT
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- LINC01020 (340094)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000473664
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 340094 | LINC01020 | long intergenic non-protein... | NR_026994.1 | 26.5% | 1_176del;645_1763del |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 537
- ORF length:
- 468
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcaccat gacctgcagt gacctgctgc taccagaact gactcgcttc aaagtgacgg 121 atgaaaccca tatggagata ttcctggggt gggtaggcca gttggaagac agagtgttta 181 cacctgagag aggacttgag aattttactc agtcacgttg ctcacTGCTG CGCACTCCTG 241 CAGACGCATC CCAGTGGACT CTGCGCTGCA TCCCCAGAGT ACAGCGAGTT TCCCGCCTCC 301 CGTTAGAGAT CCAACACATA TTTTTTTTGA AAGAAGAAAC TGATGGAAGA CAGGAAGCAA 361 AAAGGAGAGG AAGGAAAGGG ATAGGAAGGA GGGGAAGGAA AGGGAAAGGA AGGAAAAGAA 421 AGGAAAGTGA ACTTGAAATC CTACAAGGTC TCAAAGTCAA AAAACATGAT TGCTGTTTTA 481 GAGAATTGAA GATCCTTCAT CTTCAAGAAT CTGAAATCTA CCATGATCTT CACATGTTGC 541 CAACTTTCTT GTACAAAGTG GTTGATATCG GTAAGCCTAT CCCTAACCCT CTCCTCGGTC 601 TCGATTCTAC GTAGTAATGA ACTAGTCCGT AACTTGAAAG TATTTCGATT TCTTGGCTTT 661 ATATATCTTG TGGAAAGGAC GACAGGGCCG ATTTGCCGGC TTCGTTACGC GTTAAGTCga 721 caatcaacct ctggattaca aaatttgtga aagatt