Construct: ORF TRCN0000473906
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF000911.1_s317c1
- Derived from:
- ccsbBroadEn_01991
- DNA Barcode:
- GAGCGCCTCCGGAATAGGCAACTA
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- S1PR4 (8698)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000473906
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 8698 | S1PR4 | sphingosine-1-phosphate rec... | NM_003775.4 | 100% | 100% |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1218
- ORF length:
- 1152
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatgaa cgccacgggg accccggtgg cccccgagtc ctgccaacag ctggcggccg 121 gcgggcacag ccggctcatt gttctgcact acaaccactc gggccggctg gccgggcgcg 181 gggggccgga ggatggcggc ctgggggccc tgcgggggct gtcggtggcc gccagctgcc 241 tggtggtgct ggagaacttg ctggtgctgg cggccatcac cagccacatg cggtcgcgac 301 gctgggtcta ctattgcctg gtgaacatca cgctgagtga cctgctcacg ggcgcggcct 361 acctggccaa cgtgctgctg tcgggggccc gcaccttccg tctggcgccc gcccagtggt 421 tcctacggga gggcctgctc ttcaccgccc tggccgcctc caccttcagc ctgctcttca 481 ctgcagggga gcgctttgcc accatggtgc ggccggtggc cgagagcggg gccaccaaga 541 ccagccgcgt ctacggcttc atcggcctct gctggctgct ggccgcgctg ctggggatgc 601 tgcctttgct gggctggaac tgcctgtgcg cctttgaccg ctgctccagc cttctgcccc 661 tctactccaa gcgctacatc ctcttctgcc tggtgatctt cgccggcgtc ctggccacca 721 tcatgggcct ctatggggcc atcttccgcc tggtgcaggc cagcgggcag aaggccccac 781 gcccagcggc ccgccgcaag gcccgccgcc tgctgaagac ggtgctgatg atcctgctgg 841 ccttcctggt gtgctggggc ccactcttcg ggctgctgct ggccgacgtc tttGGCTCCA 901 ACCTCTGGGC CCAGGAGTAC CTGCGGGGCA TGGACTGGAT CCTGGCCCTG GCCGTCCTCA 961 ACTCGGCGGT CAACCCCATC ATCTACTCCT TCCGCAGCAG GGAGGTGTGC AGAGCCGTGC 1021 TCAGCTTCCT CTGCTGCGGG TGTCTCCGGC TGGGCATGCG AGGGCCCGGG GACTGCCTGG 1081 CCCGGGCCGT CGAGGCTCAC TCCGGAGCTT CCACCACCGA CAGCTCTCTG AGGCCAAGGG 1141 ACAGCTTTCG CGGCTCCCGC TCGCTCAGCT TTCGGATGCG GGAGCCCCTG TCCAGCATCT 1201 CCAGCGTGCG GAGCATCTGC CCAACTTTCT TGTACAAAGT GGTTGATATC GGTAAGCCTA 1261 TCCCTAACCC TCTCCTCGGT CTCGATTCTA CGTAGTAATG AACTAGTCCG TAACTTGAAA 1321 GTATTTCGAT TTCTTGGCTT TATATATCTT GTGGAAAGGA CGAGAGCGCC TCCGGAATAG 1381 GCAACTAACG CGTTAAGTCg acaatcaacc tctggattac aaaatttgtg aaagatt