Construct: ORF TRCN0000473945
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF004314.1_s317c1
- Derived from:
- BRDN0000391259
- DNA Barcode:
- ATATCGCCCTGAAAGCGGATGGGC
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- KLHL35 (283212)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000473945
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 283212 | KLHL35 | kelch like family member 35 | NM_001039548.2 | 62% | 61.7% | (many diffs) |
| 2 | mouse | 72184 | Klhl35 | kelch-like 35 | NM_028145.1 | 54.8% | 57.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1158
- ORF length:
- 1089
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcaccat gcgctgggtg cgccaggcag cgccggcccg ccgcggccag ctgcgacgcc 121 tgctggagca cgtgcgcctg ccgctactgg cgcccgctta cttcctggag aaggtggagg 181 cggacgagct gctgcaggcc tgcggcgagt gccgcccgct gctgctcgag gctcgcgcct 241 gcttcatcct gggccgcgag gccggtgcgc tgcggacccg gccgcggaga ttcatggacc 301 tagctgaagt gatcgtggtc atcggcggtt gcgaccgcaa aggtctcctg aagctgccct 361 tcgccgatgc ctaccatcca gagagccagc ggtggacccc actgcccagc ctgcccggct 421 acactcgctc agaattcgcc gcctgtgctc tccgcaatga cgtctacgtc tccggaggcc 481 acatcaacag tcatgatgtg tggatgttta gctcccatct gcacacctgg atcaaggtag 541 cctctctgca caagggcagg tggaggcaca agatggcagt tgtgcagggg cagctgttcg 601 cggtgggtgg cttcgacggc ctgaggcgcc tgcacagcgt ggagcgctac gaccccttct 661 ccaacacctg ggcggccgcc gcgcccctcc cggaggccgt gagctcggcg gcggtggcgt 721 cctgcgcggg caagctcttc gtgattgggt gcgccaggca gggcggcgtc aacacggaca 781 aggtgcagtg ctttgacccc aaggaggacc ggtggagcct gcggtcacca gcacccttct 841 cacagcggtg tctcgaggct gtctcccttg aggacaccat ctatgtcatg gggggtctca 901 tgagcaaaat cttcacctat gatccaggca cagatgtgtg gggggaggca gctgtcctcc 961 ccagccctgt ggaaagctgt GGAGTCACTG TGTGTGACGG GAAGGTCCAC ATCCTTGGCG 1021 GGCGGGATGA TCGCGGAGAA AGCACCGATA AGGTCTTCAC CTTTGACCCC AGCAGTGGGC 1081 AGGTGGAGGT CCAGCCATCC CTGCAGCGCT GCACCAGCTC CCACGGCTGT GTCACCATCA 1141 TCCAGAGCTT GGGCAGGTTG CCAACTTTCT TGTACAAAGT GGTTGATATC GGTAAGCCTA 1201 TCCCTAACCC TCTCCTCGGT CTCGATTCTA CGTAGTAATG AACTAGTCCG TAACTTGAAA 1261 GTATTTCGAT TTCTTGGCTT TATATATCTT GTGGAAAGGA CGAATATCGC CCTGAAAGCG 1321 GATGGGCACG CGTTAAGTCg acaatcaacc tctggattac aaaatttgtg aaagatt