Construct: ORF TRCN0000474173
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF005964.1_s317c1
- Derived from:
- BRDN0000395223
- DNA Barcode:
- TGCGCCAACTTGTTTCAGGATCAT
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ITGB3 (3690)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000474173
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 3690 | ITGB3 | integrin subunit beta 3 | NM_000212.2 | 99.8% | 99.6% | 20_21delCCinsAA;1803_1804delCAinsGC |
| 2 | mouse | 16416 | Itgb3 | integrin beta 3 | NM_016780.2 | 86.5% | 90.3% | (many diffs) |
| 3 | mouse | 16416 | Itgb3 | integrin beta 3 | XM_006532312.2 | 84.4% | 88.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 2433
- ORF length:
- 2364
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcaccat gcgagcgcgg ccgcggcaac ggccgctctg ggcgactgtg ctggcgctgg 121 gggcgctggc gggcgttggc gtaggagggc ccaacatctg taccacgcga ggtgtgagct 181 cctgccagca gtgcctggct gtgagcccca tgtgtgcctg gtgctctgat gaggccctgc 241 ctctgggctc acctcgctgt gacctgaagg agaatctgct gaaggataac tgtgccccag 301 aatccatcga gttcccagtg agtgaggccc gagtactaga ggacaggccc ctcagcgaca 361 agggctctgg agacagctcc caggtcactc aagtcagtcc ccagaggatt gcactccggc 421 tccggccaga tgattcgaag aatttctcca tccaagtgcg gcaggtggag gattaccctg 481 tggacatcta ctacttgatg gacctgtctt actccatgaa ggatgatctg tggagcatcc 541 agaacctggg taccaagctg gccacccaga tgcgaaagct caccagtaac ctgcggattg 601 gcttcggggc atttgtggac aagcctgtgt caccatacat gtatatctcc ccaccagagg 661 ccctcgaaaa cccctgctat gatatgaaga ccacctgctt gcccatgttt ggctacaaac 721 acgtgctgac gctaactgac caggtgaccc gcttcaatga ggaagtgaag aagcagagtg 781 tgtcacggaa ccgagatgcc ccagagggtg gctttgatgc catcatgcag gctacagtct 841 gtgatgaaaa gattggctgg aggaatgatg catcccactt gctggtgttt accactgatg 901 ccaagactca tatagcattg gacggaaggc tggcaggcat tgtccagcct aatgacgggc 961 agtgtcatgt tggtagtgac aatcattact ctgcctccac taccatggat tatccctctt 1021 tggggctgat gactgagaag ctatcccaga aaaacatcaa tttgatcttt gcagtgactg 1081 aaaatgtagt caatctctat cagaactata gtgagctcat cccagggacc acagttgggg 1141 ttctgtccat ggattccagc aatgtcctcc agctcattgt tgatgcttat gggaaaatcc 1201 gttctaaagt agagctggaa gtgcgtgacc tccctgaaga gttgtctcta tccttcaatg 1261 ccacctgcct caacaatgag gtcatccctg gcctcaagtc ttgtatggga ctcaagattg 1321 gagacacggt gagcttcagc attgaggcca aggtgcgagg ctgtccccag gagaaggaga 1381 agtcctttac cataaagccc gtgggcttca aggacagcct gatcgtccag gtcacctttg 1441 attgtgactg tgcctgccag gcccaagctg aacctaatag ccatcgctgc aacaatggca 1501 atgggacctt tgagtgtggg gtatgccgtt gtgggcctgg ctggctggga tcccagtgtg 1561 agtgctcaga ggaggactat cgcccttccc agcaggacga atgcagcccc cgggagggtc 1621 agcccgtctg cagccagcgg ggcgagtgcc tctgtggtca atgtgtctgc cacagcagtg 1681 actttggcaa gatcacgggc aagtactgcg agtgtgacga cttctcctgt gtccgctaca 1741 agggggagat gtgctcaggc catggccagt gcagctgtgg ggactgcctg tgtgactccg 1801 actggaccgg ctactactgc aactgtacca cgcgtactga cacctgcatg tccagcaatg 1861 ggctgctgtg gcgcggccgc ggcaagtgtg aatgtggcag ctgtgtctgt atccagccgg 1921 gctcctatgg ggacacctgt gagaagtgcc ccacctgccc agatgcctgc acctttaaga 1981 aagaatgtgt ggagtgtaag aagtttgacc ggggagccct acatgacgaa aataccTGCA 2041 ACCGTTACTG CCGTGACGAG ATTGAGTCAG TGAAAGAGCT TAAGGACACT GGCAAGGATG 2101 CAGTGAATTG TACCTATAAG AATGAGGATG ACTGTGTCGT CAGATTCCAG TACTATGAAG 2161 ATTCTAGTGG AAAGTCCATC CTGTATGTGG TAGAAGAGCC AGAGTGTCCC AAGGGCCCTG 2221 ACATCCTGGT GGTCCTGCTC TCAGTGATGG GGGCCATTCT GCTCATTGGC CTTGCCGCCC 2281 TGCTCATCTG GAAACTCCTC ATCACCATCC ACGACCGAAA AGAATTCGCT AAATTTGAGG 2341 AAGAACGCGC CAGAGCAAAA TGGGACACAG CCAACAACCC ACTGTATAAA GAGGCCACGT 2401 CTACCTTCAC CAATATCACG TACCGGGGCA CTTTGCCAAC TTTCTTGTAC AAAGTGGTTG 2461 ATATCGGTAA GCCTATCCCT AACCCTCTCC TCGGTCTCGA TTCTACGTAG TAATGAACTA 2521 GTCCGTAACT TGAAAGTATT TCGATTTCTT GGCTTTATAT ATCTTGTGGA AAGGACGATG 2581 CGCCAACTTG TTTCAGGATC ATACGCGTTA AGTCgacaat caacctctgg attacaaaat 2641 ttgtgaaaga tt