Construct: ORF TRCN0000474226

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF011905.1_s317c1
Derived from:
ccsbBroadEn_05977
DNA Barcode:
GACGCCTTGCCGCCTGTAACGCAC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CDH17 (1015)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000474226
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 1015 CDH17 cadherin 17 NM_001144663.2 99.7% 99.7% (many diffs)
2 human 1015 CDH17 cadherin 17 NM_004063.4 99.7% 99.7% (many diffs)
3 human 1015 CDH17 cadherin 17 XM_011516790.1 90.2% 90.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
2565
ORF length:
2496
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat gatacttcag gcccatcttc actccctgtg tcttcttatg ctttatttgg
121caactggata tggccaagag gggaagttta gtggacccct gaaacccatg acattttcta
181tttatgaagg ccaagaaccg agtcaaatta tattccagtt taaggccaat cctcctgctg
241tgacttttga actaactggg gagacagaca acatatttgt gatagaacgg gagggacttc
301tgtattacaa cagagccttg gacagggaaa caagatctac tcacaatctc caggttgcag
361ccctggacgc taatggaatt atagtggagg gtccagtccc tatcaccata gaagtgaagg
421acatcaacga caatcgaccc acgtttctcc agtcaaagta cgaaggctca gtaaggcaga
481actctcgccc aggaaagccc ttcttgtatg tcaatgccac agacctggat gatccggcca
541ctcccaatgg ccagctttat taccagattg tcatccagct tcccatgatc aacaatgtta
601tgtactttca gatcaacaac aaaacgggag ccatctctct tacccgagag ggatctcagg
661aattgaatcc tgctaagaat ccttcctata atctggtgat ctcagtgaag gacatgggag
721gccagagtga gaattccttc agtgatacca catctgtgga tatcatagtg acagagaata
781tttggaaagc accaaaacct gtggagatgg tggaaaactc aactgatcct caccccatca
841aaatcactca ggtgcggtgg aatgatcccg gtgcacaata ttccttagtt gacaaagaga
901agctgccaag attcccattt tcaattgacc aggaaggaga tatttacgtg actcagccct
961tggaccgaga agaaaaggat gcatatgttt tttatgcagt tgcaaaggat gagtacggaa
1021aaccactttc atatccgctg gaaattcatg taaaagttaa agatattaat gataatccac
1081ctacatgtcc gtcaccagta accgtatttg aggtccagga gaatgaacga ctgggtaaca
1141gtatcgggac ccttactgca catgacaggg atgaagaaaa tactgccaac agttttctaa
1201actacaggat tgtggagcaa actcccaaac ttcccatgga tggactcttc ctaatccaaa
1261cctatgctgg aatgttacag ttagctaaac agtccttgaa gaagcaagat actcctcagt
1321acaacttaac gatagaggtg tctgacaaag atttcaagac cctttgtttt gtgcaaatca
1381acgttattga tatcaatgat cagatcccca tctttgaaaa atcagattat ggaaacctga
1441ctcttgctga agacacaaac attgggtcca ccatcttaac catccaggcc actgatgctg
1501atgagccatt tactgggagt tctaaaattc tgtatcatat cataaaggga gacagtgagg
1561gacgcctggg ggttgacaca gatccccata ccaacaccgg atatgtcata attaaaaagc
1621ctcttgattt tgaaacagca gctgtttcca acattgtgtt caaagcagaa aatcctgagc
1681ctctagtgtt tggtgtgaag tacaatgcaa gttcttttgc caagttcacg cttattgtga
1741cagatgtgaa tgaagcacct caattttccc aacacgtatt ccaagcgaaa gtcagtgagg
1801atgtagctat aggcactaaa gtgggcaatg tgactgccaa ggatccagaa ggtctggaca
1861taagttattc actgagggga gacacaagag gttggcttaa aattgaccac gtgactggtg
1921agatctttag tgtggctcca ttggacagag aagccggaag tccatatcgg gtacaagtgg
1981tggccacaga agtagggggg tcttccttga gctctgtgtc agagttccac ctgatcctta
2041tggatgtgaa tgacaaccct CCCAGGCTAG CCAAGGACTA CACGGGCTTG TTCTTCTGCC
2101ATCCCCTCAG TGCACCTGGA AGTCTCATTT TTGAGGCTAC TGATGATGAT CAGCACTTAT
2161TTCGGGGTCC CCATTTTACA TTTTCCCTCG GCAGTGGAAG CTTACAAAAC GACTGGGAAG
2221TTTCCAAAAT CAATGGTACT CATGCCCGAC TGTCTACCAG GCACACAGAC TTTGAGGAGA
2281GGGAGTATGT CGTCTTGATC CGCATCAATG ATGGGGGTCG GCCACCCTTG GAAGGCATTG
2341TTTCTTTACC AGTTACATTC TGCAGTTGTG TGGAAGGAAG TTGTTTCCGG CCAGCAGGTC
2401ACCAGACTGG GATACCCACT GTGGGCATGG CAGTTGGTAT ACTGCTGACC ACCCTTCTGG
2461TGATTGGTAT AATTTTAGCA GTTGTGTTTA TCCGCATAAA GAAGGATAAA GGCAAAGATA
2521ATGTTGAAAG TGCTCAAGCA TCTGAAGTCA AACCTCTGAG AAGCTTGCCA ACTTTCTTGT
2581ACAAAGTGGT TGATATCGGT AAGCCTATCC CTAACCCTCT CCTCGGTCTC GATTCTACGT
2641AGTAATGAAC TTGGCTTTAT ATATCTTGTG GAAAGGACGA GACGCCTTGC CGCCTGTAAC
2701GCACACGCGT TAAGTCgaca atcaacctct ggattacaaa atttgtgaaa gatt

Download FASTA (ORF) (Full)