Construct: ORF TRCN0000474381
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF001693.1_s317c1
- Derived from:
- ccsbBroadEn_16130
- DNA Barcode:
- TGGCTCAGGCATGTCATGATACCA
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SKA3 (221150)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000474381
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 221150 | SKA3 | spindle and kinetochore ass... | XM_005266288.4 | 99.7% | 99.6% | 514A>G;840G>A |
| 2 | human | 221150 | SKA3 | spindle and kinetochore ass... | XM_011534994.2 | 88.5% | 88.4% | 1_126del;640A>G;966G>A |
| 3 | human | 221150 | SKA3 | spindle and kinetochore ass... | NM_145061.6 | 79.9% | 79.8% | 1_246del;760A>G;1086G>A |
| 4 | human | 221150 | SKA3 | spindle and kinetochore ass... | NM_001166017.2 | 73% | 69.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1056
- ORF length:
- 990
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatgga aaaaaattca atggatatta tgaaaataag agagtatttc cagaagtatg 121 gatatagtcc acgtgtcaag aaaaattcag tacacgagca agaagccatt aactctgacc 181 cagagttgtc taattgtgaa aattttcaga agactgatgt gaaagatgat ctgtctgatc 241 ctcctgttgc aagcagttgt atttctgaga agtctccacg tagtccacaa ctttcagatt 301 ttggacttga gcggtacatc gtatcccaag ttctaccaaa ccctccacag gcagtgaaca 361 actataagga agagcccgta attgtaaccc cacctaccaa acaatcacta gtaaaagtac 421 taaaaactcc aaaatgtgca ctaaaaatgg atgattttga gtgtgtaact cctaaattag 481 aacactttgg tatctctgaa tatactatgt gtttaaatga agattacaca atgggactta 541 aaaatgcgag gaataataaa agtgaggagg ccatagatgc agaatccagg ctcaatgata 601 atgtttttgc cactcccagc cccatcatcc agcagttgga aaaaagtgat gccgaatata 661 ccaactctcc tttggtacct acattctgta ctcctggttt gAAAATTCCA TCTACAAAGA 721 ACAGCATAGC TTTGGTATCC ACAAATTACC CATTATCAAA AACAAATAGT TCATCAAATG 781 ATTTGGAAGT TGAAGATCGT ACTTCGTTGG TTTTAAATTC AGACACATGC TTTGAGAATT 841 TAACAGATCC CTCTTCACCT ACGATTTCTT CTTATGAGAA TCTGCTCAGA ACACCTACAC 901 CTCCAGAAGT AACTAAAATT CCAGAAGATA TTCTCCAGCT TTTATCAAAA TACAACTCAA 961 ACCTAGCTAC TCCAATAGCA ATTAAAGCAG TGCCACCCAG TAAAAGGTTC CTTAAACATG 1021 GACAGAACAT CCGAGATGTC AGCAACAAAG AAAACTGCCC AACTTTCTTG TACAAAGTGG 1081 TTGATATCGG TAAGCCTATC CCTAACCCTC TCCTCGGTCT CGATTCTACG TAGTAATGAA 1141 CTAGTCCGTA ACTTGAAAGT ATTTCGATTT CTTGGCTTTA TATATCTTGT GGAAAGGACG 1201 ATGGCTCAGG CATGTCATGA TACCAACGCG TTAAGTCgac aatcaacctc tggattacaa 1261 aatttgtgaa agatt