Construct: ORF TRCN0000475206
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF007142.1_s317c1
- Derived from:
- ccsbBroadEn_03647
- DNA Barcode:
- GGTTATACGGCGGGCTTTTACCGA
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CNDP2 (55748)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000475206
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 55748 | CNDP2 | carnosine dipeptidase 2 | NM_001370248.1 | 100% | 100% | |
| 2 | human | 55748 | CNDP2 | carnosine dipeptidase 2 | NM_001370249.1 | 100% | 100% | |
| 3 | human | 55748 | CNDP2 | carnosine dipeptidase 2 | NM_001370250.1 | 100% | 100% | |
| 4 | human | 55748 | CNDP2 | carnosine dipeptidase 2 | NM_018235.3 | 100% | 100% | |
| 5 | human | 55748 | CNDP2 | carnosine dipeptidase 2 | NM_001168499.1 | 82.3% | 82.3% | 202_203ins252 |
| 6 | human | 55748 | CNDP2 | carnosine dipeptidase 2 | NM_001370254.1 | 49.6% | 49.6% | 0_1ins717 |
| 7 | mouse | 66054 | Cndp2 | CNDP dipeptidase 2 (metallo... | NM_001289531.1 | 85% | 91.1% | (many diffs) |
| 8 | mouse | 66054 | Cndp2 | CNDP dipeptidase 2 (metallo... | NM_023149.3 | 85% | 91.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1491
- ORF length:
- 1425
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatggc ggccctcact accctgttta agtacataga tgaaaatcag gatcgctaca 121 ttaagaaact cgcaaaatgg gtggctatcc agagtgtgtc tgcgtggccg gagaagagag 181 gcgaaatcag gaggatgatg gaagttgctg ctgcagatgt taagcagttg gggggctctg 241 tggaactggt ggatatcgga aaacaaaagc tccctgatgg ctcggagatc ccgctccctc 301 ctattctgct cggcaggctg ggctccgacc cacagaagaa gaccgtgtgc atttacgggc 361 acctggatgt gcagcctgca gccctggagg acggctggga cagcgagccc ttcaccctgg 421 tggagcgaga cggcaagctg tatgggagag gttcgactga tgataagggc ccggtggccg 481 gctggataaa cgccctggaa gcgtatcaga aaacaggcca ggagattcct gtcaacgtcc 541 gattctgcct cgaaggcatg gaggagtcag gctctgaggg cctagacgag ctgatttttg 601 cccggaaaga cacattcttt aaggatgtgg actatgtctg catttctgac aattactggc 661 tgggaaagaa gaagccctgc atcacctacg gcctcagggg catttgctac tttttcatcg 721 aggtggagtg cagcaacaaa gacctccatt ctggggtgta cgggggctcg gtgcatgagg 781 ccatgactga tctcattttg ctgatgggct ctttggtgga caagaggggg aacatcctga 841 tccccggcat taacgaggcc gtggccgccg tcacggaaga ggagcacaag ctgtacgacg 901 acatcgactt tgacatagag gagtttgcca aggatgtggg ggcgcagatc ctcctgcaca 961 gccacaagaa agacatcctc atgcaccgat ggcggtaccc gtctctgtcc ctccatggca 1021 tcgaaggcgc cttctctggg tctggggcca agaccgtgat tcccaggaag gtggttggca 1081 agttctccat caggctcgtg ccgaacatga cTCCTGAAGT CGTCGGCGAG CAGGTCACAA 1141 GCTACCTAAC TAAGAAGTTT GCTGAACTAC GCAGCCCCAA TGAGTTCAAG GTGTACATGG 1201 GCCACGGTGG GAAGCCCTGG GTCTCCGACT TCAGTCACCC TCATTACCTG GCTGGGAGAA 1261 GAGCCATGAA GACAGTTTTT GGTGTTGAGC CAGACTTGAC CAGGGAAGGC GGCAGTATTC 1321 CCGTGACCTT GACCTTTCAG GAGGCCACGG GCAAGAACGT CATGCTGCTG CCTGTGGGGT 1381 CAGCGGATGA CGGAGCCCAC TCCCAGAATG AAAAGCTCAA CAGGTATAAC TACATAGAGG 1441 GAACCAAGAT GCTGGCCGCG TACCTGTATG AGGTCTCCCA GCTGAAGGAC TACCCAACTT 1501 TCTTGTACAA AGTGGTTGAT ATCGGTAAGC CTATCCCTAA CCCTCTCCTC GGTCTCGATT 1561 CTACGTAGTA ATGAACTAGT CCGTAACTTG AAAGTATTTC GATTTCTTGG CTTTATATAT 1621 CTTGTGGAAA GGACGAGGTT ATACGGCGGG CTTTTACCGA ACGCGTTAAG TCgacaatca 1681 acctctggat tacaaaattt gtgaaagatt