Construct: ORF TRCN0000475602

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF002305.1_s317c1
Derived from:
ccsbBroadEn_01294
DNA Barcode:
GGCGGTGTTCCCAGCTCGGCCGTG
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
THAP12 (5612)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000475602
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 5612 THAP12 THAP domain containing 12 NM_004705.4 100% 100%
2 human 5612 THAP12 THAP domain containing 12 NR_130898.1 66.4% 1_129del;340_434del;2508_3437del
3 mouse 72981 Thap12 THAP domain containing 12 NM_028410.1 88.1% 94.6% (many diffs)
4 mouse 72981 Thap12 THAP domain containing 12 XM_011241915.2 88.1% 94.6% (many diffs)
5 mouse 72981 Thap12 THAP domain containing 12 XM_006508223.3 68% 73.8% (many diffs)
6 mouse 72981 Thap12 THAP domain containing 12 XM_006508224.3 68% 73.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
2352
ORF length:
2283
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat gccgaacttc tgcgctgccc ccaactgcac gcggaagagc acgcagtccg
121acttggcctt cttcaggttc ccgcgggacc ctgccagatg ccagaagtgg gtggagaact
181gtaggagagc agacttagaa gataaaacac ctgatcagct aaataaacat tatcgattat
241gtgccaaaca ttttgagacc tctatgatct gtagaactag tccttatagg acagttcttc
301gagataatgc aataccaaca atatttgatc ttaccagtca tttgaacaac ccacatagta
361gacacagaaa acgaataaaa gaactgagtg aagatgaaat caggacactg aaacagaaaa
421aaattgatga aacttctgag caggaacaaa aacataaaga aaccaacaat agcaatgctc
481agaaccccag cgaagaagag ggtgaagggc aagatgagga cattttacct ctaacccttg
541aagagaagga aaacaaagaa tacctaaaat ctctatttga aatcttgatt ctgatgggaa
601agcaaaacat acctctggat ggacatgagg ctgatgaaat cccagaaggt ctctttactc
661cagataactt tcaggcactg ctggagtgtc ggataaattc tggtgaagag gttctgagaa
721agcggtttga gacaacagca gttaacacgt tgttttgttc aaaaacacag cagaggcaga
781tgctagagat ctgtgagagc tgtattcgag aagaaactct cagggaagtg agagactcac
841acttcttttc cattatcact gacgatgtag tggacatagc aggggaagag cacctacctg
901tgttggtgag gtttgttgat gaatctcata acctaagaga ggaatttata ggcttcctgc
961cttatgaagc cgatgcagaa attttggctg tgaaatttca cactatgata actgagaagt
1021ggggattaaa tatggagtat tgtcgtggcc aggcttacat tgtctctagt ggattttctt
1081ccaaaatgaa agttgttgct tctagacttt tagagaaata tccccaagct atctacacac
1141tctgctcttc ctgtgcctta aatatgtggt tggcaaaatc agtacctgtt atgggagtat
1201ctgttgcatt aggaacaatt gaggaagttt gttctttttt ccatcgatca ccacaactgc
1261ttttagaact tgacaacgta atttctgttc tttttcagaa cagtaaagaa aggggtaaag
1321aactgaagga aatctgccat tctcagtgga caggcaggca tgatgctttt gaaattttag
1381tggaactcct gcaagcactt gttttatgtt tagatggtat aaatagtgac acaaatatta
1441gatggaataa ctatatagct ggccgagcat ttgtactctg cagtgcagtg tcagattttg
1501atttcattgt tactattgtt gttcttaaaa atgtcctatc ttttacaaga gcctttggga
1561aaaacctcca ggggcaaacc tctgatgtct tctttgcggc cggtagcttg actgcagtac
1621tgcattcact caacgaagtg atggaaaata ttgaagttta tcatgaattt tggtttgagg
1681aagccacaaa tttggcaacc aaacttgata ttcaaatgaa actccctggg aaattccgca
1741gagctcacca gggtaacttg gaatctcagc taacctctga gagttactat aaagaaaccc
1801taagtgtccc aacagtggag cacattattc aggaacttaa agatatattc tcagaacagc
1861acctcaaagc tcttaaatgc ttatctctgg taccctcagt catgggacaa ctcaaattca
1921atacgtcgga ggaacaccat gctgacatgt atagaagtga cttacccaat cctgacacgc
1981tgtcagctga gcttcattgt tGGAGAATCA AATGGAAACA CAGGGGGAAA GATATAGAGC
2041TTCCGTCCAC CATCTATGAA GCCCTCCACC TGCCTGACAT CAAGTTTTTT CCTAATGTGT
2101ATGCATTGCT GAAGGTCCTG TGTATTCTTC CTGTGATGAA GGTTGAGAAT GAGCGGTATG
2161AAAATGGACG AAAGCGTCTT AAAGCATATT TGAGGAACAC TTTGACAGAC CAAAGGTCAA
2221GTAACTTGGC TTTGCTTAAC ATAAATTTTG ATATAAAACA CGACCTGGAT TTAATGGTGG
2281ACACATATAT TAAACTCTAT ACAAGTAAGT CAGAGCTTCC TACAGATAAT TCCGAAACTG
2341TGGAAAATAC CTTGCCAACT TTCTTGTACA AAGTGGTTGA TATCGGTAAG CCTATCCCTA
2401ACCCTCTCCT CGGTCTCGAT TCTACGTAGT AATGAACTAG TCCGTAACTT GAAAGTATTT
2461CGATTTCTTG GCTTTATATA TCTTGTGGAA AGGACGAGGC GGTGTTCCCA GCTCGGCCGT
2521GACGCGTTAA GTCgacaatc aacctctgga ttacaaaatt tgtgaaagat t

Download FASTA (ORF) (Full)

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