Construct: ORF TRCN0000476248
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF010760.1_s317c1
- Derived from:
- ccsbBroadEn_01548
- DNA Barcode:
- TGGGAACTCCCTCCCGAGTCGATC
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SLC10A1 (6554)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000476248
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 6554 | SLC10A1 | solute carrier family 10 me... | NM_003049.4 | 100% | 100% |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1113
- ORF length:
- 1047
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatgga ggcccacaac gcgtctgccc cattcaactt caccctgcca cccaactttg 121 gcaagcgccc cacagacctg gcactgagcg tcatcctggt gttcatgttg ttcttcatca 181 tgctctcgct gggctgcacc atggagttca gcaagatcaa ggctcactta tggaagccta 241 aagggctggc catcgccctg gtggcacagt atggcatcat gcccctcacg gcctttgtgc 301 tgggcaaggt cttccggctg aagaacattg aggcactggc catcttggtc tgtggctgct 361 cacctggagg gaacctgtcc aatgtcttca gtctggccat gaagggggac atgaacctca 421 gcattgtgat gaccacctgc tccaccttct gtgcccttgg catgatgcct ctcctcctgt 481 acatctactc cagggggatc tatgatgggg acctgaagga caaggtgccc tataaaggca 541 tcgtgatatc actggtcctg gttctcattc cttgcaccat agggatcgtc ctcaaatcca 601 aacggccaca atacatgcgc tatgtcatca agggagggat gatcatcatt ctcttgtgca 661 gtgtggccgt cacagttctc tctgccatca atgtggggaa gagcatcatg tttgccatga 721 caccactctt gattgccacc tcctccctga tgccttttat tggctttctg ctgggttatg 781 ttctcTCTGC TCTCTTCTGC CTCAATGGAC GGTGCAGACG CACTGTCAGC ATGGAGACTG 841 GATGCCAAAA TGTCCAACTC TGTTCCACCA TCCTCAATGT GGCCTTTCCA CCTGAAGTCA 901 TTGGACCACT TTTCTTCTTT CCCCTCCTCT ACATGATTTT CCAGCTTGGA GAAGGGCTTC 961 TCCTCATTGC CATATTTTGG TGCTATGAGA AATTCAAGAC TCCCAAGGAT AAAACAAAAA 1021 TGATCTACAC AGCTGCCACA ACTGAAGAAA CAATTCCAGG AGCTCTGGGA AATGGCACCT 1081 ACAAAGGGGA GGACTGCTCC CCTTGCACAG CCTACCCAAC TTTCTTGTAC AAAGTGGTTG 1141 ATATCGGTAA GCCTATCCCT AACCCTCTCC TCGGTCTCGA TTCTACGTAG TAATGAACTA 1201 GTCCGTAACT TGAAAGTATT TCGATTTCTT GGCTTTATAT ATCTTGTGGA AAGGACGATG 1261 GGAACTCCCT CCCGAGTCGA TCACGCGTTA AGTCgacaat caacctctgg attacaaaat 1321 ttgtgaaaga tt