Construct: ORF TRCN0000476390
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF012423.1_s317c1
- Derived from:
- ccsbBroadEn_10654
- DNA Barcode:
- ACGTTCATTGATTCGGAGCATCCG
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- LOC641367 (641367)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000476390
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 151195 | CCNYL1 | cyclin Y like 1 | NM_001142300.1 | 20.5% | 10.3% | (many diffs) |
| 2 | human | 151195 | CCNYL1 | cyclin Y like 1 | NM_001330218.1 | 17.6% | 8.9% | (many diffs) |
| 3 | human | 641367 | LOC641367 | cyclin Y like 1 pseudogene | NR_024523.1 | 7.9% | 1_102del;316_2694del |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 93
- ORF end:
- 306
- ORF length:
- 213
- Sequence:
-
1 TCAGACAGTG GTTCAAAGTT TTTTTCTTCC ATTTCAGGTG TCGTGAGGCT AGCATCGATT 61 GATCAACAAG TTTGTACAAA AAAGTTGGCA CCATGGGGAA CACGCTGACC TATTGCGTGT 121 CCCCCCAGTA CCAGCCTCAA GCTGGGCCGG TGCGTGGTGC CAGAGCTGTA CTGCGCAACC 181 GACATCTACG AGGCGGCACC CGGGGATGCG GTGGCGGTAG CGCCCGCTTC TGTGGAGCCT 241 ACCAGTTGGA TTTCGCAGCG GGCGAGGGCC ACCACCTGCA GCACATCAGC GACCACGAGA 301 TGCCCTTGCC AACTTTCTTG TACAAAGTGG TTGATATCGG TAAGCCTATC CCTAACCCTC 361 TCCTCGGTCT CGATTCTACG TAGTAATGAA CTAGTCCGTA ACTTGAAAGT ATTTCGATTT 421 CTTGGCTTTA TATATCTTGT GGAAAGGACG AACGTTCATT GATTCGGAGC ATCCGACGCG 481 TTAAGTCgac aatcaacctc tggattacaa aatttgtgaa agatt