Construct: ORF TRCN0000476410
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF002602.1_s317c1
- Derived from:
- ccsbBroadEn_06541
- DNA Barcode:
- AGAGCGACGGTCGAAGTCTGGGGC
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- LTBP2 (4053)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000476410
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 4053 | LTBP2 | latent transforming growth ... | NM_000428.3 | 99.9% | 99.9% | (many diffs) |
| 2 | human | 4053 | LTBP2 | latent transforming growth ... | XM_011536765.2 | 92.9% | 92.9% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 67
- ORF end:
- 5530
- ORF length:
- 5463
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggccatga ggccgcggac caaagcccgc agcccggggc gcgccctgcg gaacccctgg 121 agaggcttcc tgccgctcac cctggctctc ttcgtgggcg cgggtcatgc ccaaagggac 181 cccgtaggga gatacgagcc ggctggtgga gacgcgaatc gactgcggcg ccctgggggc 241 agctacccgg cagcggctgc agccaaggtg tacagtctgt tccgggagca ggacgcgcct 301 gtcgcgggct tgcagcccgt ggagcgggcc cagccgggct gggggagccc caggaggccc 361 accgaggcgg aggccaggag gccgtcccgc gcgcagcagt cgcggcgtgt ccagccacct 421 gcgcagaccc ggagaagcac tcccctgggc cagcagcaac cagcaccccg gacccgggcc 481 gcgccggctc tcccacgcct ggggacccca cagcggtctg gggctgcgcc cccaaccccg 541 ccgcgagggc gactcacggg gaggaacgtc tgcgggggac agtgctgccc aggatggaca 601 acagcaaaca gcaccaacca ctgtatcaaa cccgtttgcg agccgccgtg ccagaaccgg 661 ggctcctgca gccgcccgca gctctgtgtc tgccgctctg gtttccgtgg agcccgctgc 721 gaggaggtca ttcccgatga ggaatttgac ccccagaact ccaggctggc acctcgacgc 781 tgggccgagc gttcacccaa cctgcgcagg agcagtgcgg ctggagaggg caccttggcc 841 agagcacagc cgccagcacc acagtcgccg cccgcaccac agtcgccacc agctgggacc 901 ctgagtggcc tcagccagac ccacccttcc cagcagcacg tggggttgtc ccgcactgtc 961 cgacttcacc cgactgccac ggccagtagc cagctctctt ccaacgccct gcccccggga 1021 ccaggccttg agcagagaga tggcacccaa caggcggtac ctctggagca cccctcatcc 1081 ccctgggggc tgaacctcac ggagaaaatc aagaagatca agatcgtctt cactcccacc 1141 atctgcaagc agacctgtgc ccgtggacac tgtgccaaca gctgtgagag gggcgacacc 1201 accaccctgt acagccaggg cggccatggg cacgatccca agtctggctt ccgcatctat 1261 ttctgccaga tcccctgcct gaacggaggc cgctgcatcg gcagggacga atgctggtgc 1321 cccgccaact ccaccgggaa gttctgccac ctgcctatcc cgcagccgga cagggagcct 1381 ccagggaggg ggtcccgccc cagggccttg ctggaagccc cactgaagca gtccactttc 1441 acactgccgc tctccaacca gctggcctcc gtgaacccct ccctggtgaa ggtgcacatt 1501 caccacccac ccgaggcctc agtgcagatc caccaggtgg cccaggtgcg gggcggggtg 1561 gaggaggccc tagtggagaa cagcgtggag accagacccc cgccctggct gcctgccagc 1621 cctggccaca gcctctggga cagcaacaac atccctgctc ggtctggaga gccccctcgg 1681 ccactgcccc cagcagcacc caggcctcga ggactgctgg gccggtgtta cctgaacact 1741 gtgaacggac agtgtgccaa ccctctgctg gagctgacta cccaggagga ctgctgtggc 1801 agtgtgggag ccttctgggg ggtgactttg tgtgccccat gcccacccag accagcctcc 1861 ccggtgattg agaatggcca gctggagtgt cctcaggggt acaagagact gaacctcact 1921 cactgccaag atatcaacga gtgcttgacc ctgggcctgt gcaaggacgc ggagtgtgtg 1981 aataccaggg gcagctacct gtgcacatgc agacctggcc tcatgctgga tccatcgcgg 2041 agccgctgtg tgtcggacaa ggcaatctcc atgctgcagg gactgtgcta ccggtcgctg 2101 gggcccggca cctgcaccct gcctttggcc cagcggatca ccaagcagat atgctgctgc 2161 agccgcgtgg gcaaagcatg gggcagcgag tgtgagaaat gccctctgcc tggcacagag 2221 gccttcagag agatctgccc tgccggccac ggctacacct acgcgagctc cgacatccgc 2281 ctgtccatga ggaaagccga ggaggaggaa ctggcaaggc ccccaaggga gcaagggcag 2341 aggagcagcg gggcactgcc cgggccagca gagaggcagc ccctccgggt cgtcacggac 2401 acctggcttg aggccgggac catccctgac aagggtgact ctcaggctgg ccaggtcacg 2461 accagtgtca ctcatgcacc tgcctgggtc acagggaatg ccacaacccc accaatgcct 2521 gaacagggga ttgcagagat acaggaagaa caagtgaccc cctccaccga tgtgctggtg 2581 accctgagca ccccaggcat tgacagatgc gctgctggag ccaccaacgt ctgtggccct 2641 ggaacctgcg tgaacctccc cgatggatac agatgtgtct gcagccctgg ctaccagctg 2701 caccccagcc aggcctactg cacagatgac aacgagtgtc tgagggaccc ctgcaaggga 2761 aaagggcgct gcatcaaccg cgtggggtcc tactcctgct tctgctaccc tggctacact 2821 ctggccacct caggggcgac acaggagtgt caagatatca atgagtgtga gcagccaggg 2881 gtgtgcagcg gggggcagtg caccaacacc gagggctcgt accactgcga gtgtgatcag 2941 ggctacatca tggtcaggaa aggacactgc caagatatca acgaatgccg tcaccccggt 3001 acctgccctg atgggagatg cgtcaattcc cctggctcct acacttgtct ggcctgtgag 3061 gagggctacc ggggccagag tgggagctgt gtagatgtga atgagtgtct gactcccggg 3121 gtctgtgccc atggaaagtg caccaaccta gaaggctcct tcagatgctc ttgtgagcag 3181 ggctatgagg tcacctcaga tgagaagggc tgccaagatg tggatgagtg tgccagccgg 3241 gcctcatgcc ccacaggcct ctgcctcaac acggagggct ccttcgcctg ctctgcctgt 3301 gagaacgggt actgggtgaa tgaagacggc actgcctgtg aagacctaga tgagtgtgcc 3361 ttcccgggag tctgcccctc cggagtctgc accaacacgg ctggctcctt ctcctgcaag 3421 gactgcgatg ggggctaccg gcccagcccc ctgggtgact cctgtgaaga tgtggatgaa 3481 tgtgaagacc cccagagcag ctgcctggga ggcgagtgca agaacactgt gggctcctac 3541 cagtgcctct gtccccaggg cttccagctg gccaatggca ccgtgtgtga ggatgtgaat 3601 gagtgcatgg gggaggagca ctgcgcacca cacggcgagt gcctcaacag ccacgggtct 3661 ttcttctgtc tgtgcgcgcc tggcttcgtc agcgcagagg ggggcaccag ctgccaggat 3721 gtggacgagt gtgccaccac agacccgtgt gtgggagggc actgtgtcaa caccgagggc 3781 tccttcaact gtctatgtga gactggcttc cagccctccc cagagagtgg agagtgtgtg 3841 gatattgacg agtgtgagga ctatggagac ccggtgtgtg gcacctggaa gtgtgaaaac 3901 agccctggct cctaccgctg tgttctgggc tgccagcctg gcttccacat ggccccgaac 3961 ggagactgca ttgacataga cgagtgcgcc aacgacacca tgtgtggcag ccacggcttc 4021 tgtgacaaca ctgatggctc cttccgctgc ctctgtgacc agggcttcga gatctctccc 4081 tcaggctggg actgtgtgga tgtgaacgag tgtgagctta tgctggcggt atgtggggcc 4141 gcgctctgtg agaacgtgga gggctccttc ctgtgcctct gtgccagtga cctggaggag 4201 tacgatgccc aggaggggca ctgccgccca cggggggctg gaggtcagag tatgtctgag 4261 gccccaacgg gggaccatgc cccggccccc acccgcatgg actgctactc cgggcagaag 4321 ggccatgcgc cctgctccag tgtcctgggc cggaacacca cacaggctga atgctgctgc 4381 acccagggcg ctagctgggg agatgcctgt gacctctgcc cgtctgagga ctcagctgaa 4441 ttcagcgaga tctgccctag tggaaaaggc tacattcctg tggaaggagc ctggacgttt 4501 ggacagacca tgtacacaga tgcggatgag tgtgtgatat tcgggcctgg tctctgcccg 4561 aacggccggt gcctcaacac cgtgcctggt tatgtctgcc tgtgcaatcc cggcttccac 4621 tacgatgctt cccacaagaa gtgtgaggat cacgatgagt gccaggacct ggcctgtgag 4681 aatggcgagt gcgtcaacac ggagggctcc ttccactgct tctgcagccc cccgctcacc 4741 ctggacctca gccagcagcg ctgcatgaac agcaccagca gcacggagga cctccctgac 4801 cacgacatcc acatggacat ctgctggaaa aaagtcacca atgatgtgtg cagcgaaccc 4861 ctgcgtgggc accgcaccac ctacacggaa tgctgctgcc aggacggcga ggcctggagc 4921 cagcagtgtg ctctgtgtcc cccgaggagc tctgaggtct atgctcagct gtgcaacgtg 4981 gctcgcattg aggcagagcg ggaggccggg gtccacttcc ggccaggcta tgagtatggc 5041 cccgggcccg atgacctgca ctacagcatc tatggcccag atggggcccc cttctacaac 5101 tacctgggcc ccgaggacac cgtccctgat cctgccttcc ccaacacagc cggtcacTCA 5161 GCGGACCGCA CACCCATCCT TGAGTCTCCT TTGCAGCCCT CAGAACTCCA GCCCCACTAC 5221 GTGGCCAGCC ATCCAGAGCC CCCAGCCGGC TTCGAAGGGC TTCAGGCGGA GGAGTGCGGC 5281 ATCCTGAACG GCTGTGAGAA TGGCCGCTGT GTGCGCGTGC GGGAGGGCTA CACCTGTGAC 5341 TGTTTTGAGG GCTTCCAGCT GGATGCGGCC CACATGGCCT GCGTAGATGT GAATGAGTGT 5401 GATGACTTGA ACGGGCCTGC TGTGCTCTGT GTCCATGGTT ACTGCGAGAA CACAGAGGGC 5461 TCCTACCGCT GCCACTGCTC CCCGGGATAT GTGGCTGAGG CAGGGCCCCC CCACTGCACT 5521 GCCAAGGAGT TGCCAACTTT CTTGTACAAA GTGGTTGATA TCGGTAAGCC TATCCCTAAC 5581 CCTCTCCTCG GTCTCGATTC TACGTAGTAA TGAACTAGTC CGTAACTTGA AAGTATTTCG 5641 ATTTCTTGGC TTTATATATC TTGTGGAAAG GACGAAGAGC GACGGTCGAA GTCTGGGGCA 5701 CGCGTTAAGT Cgacaatcaa cctctggatt acaaaatttg tgaaagatt