Construct: ORF TRCN0000476684
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF018434.1_s317c1
- Derived from:
- ccsbBroadEn_05515
- DNA Barcode:
- GTCACTCGCGACTCACTTAAGCTT
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- C2orf48 (348738)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000476684
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 6241 | RRM2 | ribonucleotide reductase re... | NR_164157.1 | 21.9% | 1_1106del;1299_1477del;1763_2178del |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 546
- ORF length:
- 477
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcaccat ggagtccagg ccctcgggga gacagcacgc cagtgaggga gatggagacc 121 aatcacccac ccagtgtgcg gggatgagaa gctcgggaag gtctgaccag ccttacgtct 181 tgaaagggaa tCCCCTGCTT CTGCGTGTCA GGTGTTACTC GGGGTGCGCC AGTGGAAGCG 241 GGAGGCAGTT GCAGCTTTCA GTCTTCCAGG ATCTCAACCA GTTCTCTCAC TGCAGAGTCT 301 GGAGAAGCCC AGCCCTCATT GTGAAGGGAG AGCCACCGTG GTGCTCACAG CAAGACACCC 361 AGAGTCCCTT CCAGACAGGG ACACCCCTGG AGCGACCCTG TTTCAGAATG AAGTTATCTG 421 GGTGGGAACT CACCAAGAAT GCACAGAGGG CGCTGGGCTC CAAGCTTCAG CATATCCTTT 481 CACTGGACTC CACACAGGCC TGCGGAGCAG GTGGACCCAC CATTCTCAGA CCCCCCAGGG 541 CCCCATTGCC AACTTTCTTG TACAAAGTGG TTGATATCGG TAAGCCTATC CCTAACCCTC 601 TCCTCGGTCT CGATTCTACG TAGTAATGAA CTAGTCCGTA ACTTGAAAGT ATTTCGATTT 661 CTTGGCTTTA TATATCTTGT GGAAAGGACG AGTCACTCGC GACTCACTTA AGCTTACGCG 721 TTAAGTCgac aatcaacctc tggattacaa aatttgtgaa agatt