Construct: ORF TRCN0000476826

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF013974.1_s317c1
Derived from:
ccsbBroadEn_08628
DNA Barcode:
AATTAAATCCCCATATTCGCTGGA
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PCDHAC1 (56135)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000476826
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 56135 PCDHAC1 protocadherin alpha subfami... NM_031882.3 99.8% 99.8% 807G>A;1269C>G;1492C>G
2 human 56135 PCDHAC1 protocadherin alpha subfami... NM_018898.3 84.5% 84.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
2523
ORF length:
2454
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat ggtgggctgt ggggtggcag ttttatgttt gtgggtttcc tgcggcgctg
121cagcgggaca gctcgagtac tcagtgccgg aggagacgga gcggggcgta gccgtaggca
181atctctccgc ggacttgagg ctgccagcgg ccgctatgtc ctcgcggaac tttcgcttcc
241tttccagcca ccgcgagctc tacttcgggg tggatctacc cagcggcaat ttggtggtca
301gagagccggc ggaccgcgaa cagctgtgca gggccaaagc tgcctgcgtc ttgacctacg
361acctggtgct cgaggacccg ctggagctgc acaagattcg gattcacgtc ctggacacca
421atgacaactc acctctcttt cctgccggcg acgtgcagct gcacatcccc gagttcctga
481cgcccggagc ccgctttact ctcccgaatg cccaagatga cgacgaggga agcaatggga
541tactaagcta cagcctaagc cccagtcagc actttcgcct ggacatggga tcgcgggttg
601acggcagcga atacccggag ttggtgttgg agaaagcact ggatcgcgaa cagcgcgcca
661cccacctgct ggtgcttaca gctcgggacg gcgggctacc tgcccgctca ggagacgcac
721aagtcaccat cattgtggtg gacacaaatg acaacgcgcc tgtatttgag cgctccgtat
781accgcaccaa ggttccagag actgcaccca atgggactgt gttattccga gttcaagcct
841tggatccaga tgaagggtcc aatggggaag tccaatactc cctaagcaac agcacgcaag
901cagagctgcg acaccgcttt cacgtgcacc ctaaaagtgg ggaggtgcaa gtagctgctt
961cactaggtcc gcctgaaacg ctcttggagg catacattga ggcgagggac gaaggtgtct
1021ttggtttagc tagcaccgct aaactgctgg tggaggtgac tgacgtgaac gatcatgccc
1081ccgaactgga cttcctgact ctttcgaacc cagtacctga ggacgctgcc cctggcacag
1141tgattgctct ctttagtgta aaggatgaag acctcgattc taatggtagg gtcatttgtg
1201gcatgtctag tgcaggccct tttcagctga cggcttcctt tgacaactac tacagcctgc
1261tgattgatgg gcccctggac cgggagcaga tcagtgaata ccaagtcctg atcacggcct
1321cagatagtgg ctcaccgcca cttagcaccc gaaggacaat cactgtgtca gttgctgatg
1381tgaatgacaa tacaccaaac tttcctcaac cccagcagga acttttcgtt gctgaaaaca
1441atggccctgg ggcctctcta ggccgagtgt ttgcccagga ccccgacctg gggaagaatg
1501gccttgtctc ttatgagctg ttggatgtta tctctgaagg gccatcagcc tctagcttgg
1561tggcagtgga atcatccagt ggggccatca ctgccaaaac ttcctttgac tttgagcagc
1621tcagggggtt tcatttccaa gtagaaggcc gggatggtgg cattcctccc agaagtgcaa
1681cagtgactat aaacttgttt gtggtagata ggaatgacaa ttatccggtt atcttgtttc
1741ccttgcccag aaatggttct gtcccagtgg aaattgtgcc ccgctctgcc aggactggac
1801acttggtcac aaaagtggta gcagaggatg ctgacagtgg ttctaatgcc tggctttcct
1861accacatctc ccgggcgtct gactctagtc tctttagaat ttcagccaat ataggtgagc
1921tccgtactgc tcgcttagtt cttcccactg atgcagttaa gcagagggtg gtggtagtgg
1981ttcgggacca tggagaccca ccactttcct cctctgtcac tctgggtgtg ctgttgagca
2041actctgtccc tcagttactt ccagactttg aagatgtctg ggaaccagga gggcagcttt
2101ctgcccagaa cttgtattta gtaattgcct tggcttgtat ttccttttta tttctggggt
2161gcttactttt cttcgtgtgt accaagttgc accagagccc aggctgttgc gctcagagct
2221gctgtcgctc tacagaggat cTGAGGTATG GAAGTAAGAT GGTTTCAAAT CCTTGCATGA
2281CATCAGCCAC CATAGATGTC ACTACAGTTG AGAGACTTTC TCAGACTTAT CTCTATCGGG
2341CCTCTCTGGG ACTTGGTTCT GATAATAACA GTTTGCTGTT GCGTGGGGAG TACAATGCTG
2401CCGACCTGCG AAATCTTGCC ACTGGGGTAG GACTGAATTT GCCAATATCC TGTATTCAGA
2461TTCGGAATAG GAAAGGGGAT CACGCTAATG TCAATGCCAT GGTAAGCAAA TTTTATGGAA
2521TTTTGCCAAC TTTCTTGTAC AAAGTGGTTG ATATCGGTAA GCCTATCCCT AACCCTCTCC
2581TCGGTCTCGA TTCTACGTAG TAATGAACTA GTCCGTAACT TGAAAGTATT TCGATTTCTT
2641GGCTTTATAT ATCTTGTGGA AAGGACGAAA TTAAATCCCC ATATTCGCTG GAACGCGTTA
2701AGTCgacaat caacctctgg attacaaaat ttgtgaaaga tt

Download FASTA (ORF) (Full)

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