Construct: ORF TRCN0000476879
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF009402.1_s317c1
- Derived from:
- ccsbBroadEn_01497
- DNA Barcode:
- GATATTTTTTAACAGACTATGTCG
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CCL3L1 (6349)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000476879
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 414062 | CCL3L3 | C-C motif chemokine ligand ... | NM_001001437.4 | 100% | 100% | |
| 2 | human | 6349 | CCL3L1 | C-C motif chemokine ligand ... | NM_021006.5 | 100% | 100% | |
| 3 | human | 6348 | CCL3 | C-C motif chemokine ligand 3 | NM_002983.3 | 95.6% | 94.6% | (many diffs) |
| 4 | human | 6349 | CCL3L1 | C-C motif chemokine ligand ... | NR_111964.1 | 27.9% | 1_85del;162_353del;557_997del |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 81
- ORF end:
- 360
- ORF length:
- 279
- Sequence:
-
1 GGTTCAAAGT TTTTTTCTTC CATTTCAGGT GTCGTGAGGC TAGCATCGAT TGATCAACAA 61 GTTTGTACAA AAAAGTTGGC ATGCAGGTCT CCACTGCTGC CCTTGCCGTC CTCCTCTGCA 121 CCATGGCTCT CTGCAACCAG GTCCTCTCTG CACCACTTGC TGCTGACACG CCGACCGCCT 181 GCTGCTTCAG CTACACCTCC CGACAGATTC CACAGAATTT CATAGCTGAC TACTTTGAGA 241 CGAGCAGCCA GTGCTCCAAG CCCAGTGTCA TCTTCCTAAC CAAGAGAGGC CGGCAGGTCT 301 GTGCTGACCC CAGTGAGGAG TGGGTCCAGA AATACGTCAG TGACCTGGAG CTGAGTGCCT 361 GCCCAACTTT CTTGTACAAA GTGGTTGATA TCGGTAAGCC TATCCCTAAC CCTCTCCTCG 421 GTCTCGATTC TACGTAGTAA TGAACTAGTC CGTAACTTGA AAGTATTTCG ATTTCTTGGC 481 TTTATATATC TTGTGGAAAG GACGAGATAT TTTTTAACAG ACTATGTCGA CGCGTTAAGT 541 Cgacaatcaa cctctggatt acaaaatttg tgaaagatt