Construct: ORF TRCN0000477728

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF010914.1_s317c1
Derived from:
ccsbBroadEn_04834
DNA Barcode:
ATGCCCTGAATGTTCTGGGTGTGC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
LIX1L (128077)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000477728
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 128077 LIX1L limb and CNS expressed 1 like NM_153713.3 99.9% 100% 99C>T
2 human 128077 LIX1L limb and CNS expressed 1 like XM_017000316.1 90.4% 90.5% 99C>T;597_598ins96
3 mouse 280411 Lix1l Lix1-like NM_001163170.1 90.4% 97% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1077
ORF length:
1011
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgga gactatgcga gcgcagcggc tgcagcctgg tgtgggcacc agcgggaggg
121gcactctccg agcgctgcgg cccggagtga ctggggccgc ggctgccacc gccacacccc
181ctgcgggccc cccgcctgcc ccgccgcctc ccgcaccgcc cccgccgccg ctgctcctgt
241ctggggcccc aggactaccc ctgccccccg gcgccgccgg cagcccggca gtgctgcgag
301aggccgtgga ggccgtggtg aggagcttcg ccaagcacac gcagggctat ggccgagtga
361atgtggtgga ggcacttcag gaattctggc agatgaagca gtcccgtggt gctgacttaa
421agaatggggc tctagtggtt tatgagatgg ttccctccaa cagccctcct tatgtctgct
481atgtcaccct gcctggggga agctgctttg ggagtttcca gttttgcccc acaaaagctg
541aggcccggag gagtgctgca aagattgcgc taatgaattc tgtgtttaat gaacatcctt
601cccgaagaat cactgatgag ttcatcgaga agagtgtctc tgaggccctg gCATCTTTTA
661ATGGCAACAG GGAGGAAGCT GACAACCCAA ATACAGGGAT TGGTGCCTTC CGATTCATGC
721TGGAATCCAA CAAGGGCAAA TCAATGTTGG AGTTCCAGGA GCTAATGACA GTTTTTCAAC
781TGCTACACTG GAATGGCAGC CTTAAGGCCA TGAGGGAACG ACAATGCTCT CGGCAGGAGG
841TGTTGGCTCA TTATTCGCAC CGGGCCCTGG ATGATGATAT TCGCCACCAA ATGGCCTTGG
901ACTGGGTGAG CCGGGAGCAG AGTGTGCCGG GGGCACTGTC TAGAGAGCTG GCCTCTACTG
961AGCGGGAGCT GGATGAAGCC CGACTGGCAG GCAAGGAGCT GCGCTTCCAC AAGGAGAAGA
1021AAGATATTCT TGTGCTGGCT GCTGGGCAGT TGGGCAATAT GCATTCTTCC AACTGCTACC
1081CAACTTTCTT GTACAAAGTG GTTGATATCG GTAAGCCTAT CCCTAACCCT CTCCTCGGTC
1141TCGATTCTAC GTAGTAATGA ACTAGTCCGT AACTTGAAAG TATTTCGATT TCTTGGCTTT
1201ATATATCTTG TGGAAAGGAC GAATGCCCTG AATGTTCTGG GTGTGCACGC GTTAAGTCga
1261caatcaacct ctggattaca aaatttgtga aagatt

Download FASTA (ORF) (Full)