Construct: ORF TRCN0000478203
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF015374.1_s317c1
- Derived from:
- ccsbBroadEn_14456
- DNA Barcode:
- CCGTGTAATTTAAGTACTCTGTTA
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- BOD1L1 (259282)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000478203
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 259282 | BOD1L1 | biorientation of chromosome... | XM_011513830.3 | 9.7% | 9.7% | 1_7698del;8147_8191del;8479_8619del |
| 2 | human | 259282 | BOD1L1 | biorientation of chromosome... | NM_148894.3 | 9.3% | 9.3% | 1_8301del |
| 3 | human | 259282 | BOD1L1 | biorientation of chromosome... | XM_017008010.1 | 9.2% | 9.2% | 1_8301del;8668_8669insAAG |
| 4 | human | 259282 | BOD1L1 | biorientation of chromosome... | XM_011513829.2 | 9.2% | 9.2% | 1_8301del;8750_8794del |
| 5 | human | 259282 | BOD1L1 | biorientation of chromosome... | XM_017008009.1 | 9.2% | 9.1% | 1_8301del;8668_8669insAAG;8747_8791del |
| 6 | human | 259282 | BOD1L1 | biorientation of chromosome... | XM_005248150.3 | 9.1% | 9.1% | 1_8301del;9037_9177del |
| 7 | human | 259282 | BOD1L1 | biorientation of chromosome... | XM_005248151.3 | 9.1% | 9.1% | 1_8301del;8668_8669insAAG;9034_9174del |
| 8 | human | 259282 | BOD1L1 | biorientation of chromosome... | XM_011513827.2 | 9.1% | 9% | 1_8301del;8750_8794del;9082_9222del |
| 9 | human | 259282 | BOD1L1 | biorientation of chromosome... | XM_006713958.3 | 9% | 9% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 918
- ORF length:
- 852
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatgcc taaaagaaaa agaaagcagc attatctctc ttcagaagat gaaccagatg 121 ataatccaga tgtcctggat tccagaatag aaacagcaca aaggcagtgt cctgaaacgg 181 agccacatga cacaaaggaa gagaactcca gagatttgga agaattacct aaaaccagtt 241 ctgagacaaa tagcactacc tcaagggtca tggaagaaaa agatgaatat agcagcagtg 301 aaactactgg tgaaaagcca gagcagaacg atgatgacac cataaaatct caggaggaag 361 atcagccaat aattattaaa aggaaaagag gaagacctcg caaataccct gtagaaacaa 421 cgttaaaaat gaaagacgac tccaaaacag atactggcat tgtcactgta gaacaatctc 481 catctagcag caaactgaaa gtaatgcaaa cagatgaatc caataaagaa acagctaacc 541 tacaagaaag aagtataagc aatgatgatg gtgaagaaaa aatagtaaca agtgtgcgtc 601 ggagaggaag aaaacccaaa cgttctctca ctgtatcaga tgatgctgaa tccTCAGAGC 661 CAGAAAGAAA ACGCCAGAAA TCAGTTTCTG ATCCAGTGGA GGACAAGAAA GAGCAGGAGT 721 CTGATGAGGA AGAGGAAGAA GAGGAAGAGG ACGAGCCTTC AGGAGCCACC ACAAGATCCA 781 CCACCAGATC AGAGGCTCAG AGATCAAAGA CACAGCTCTC CCCTTCTATC AAGCGCAAGA 841 GAGAAGTCAG CCCTCCTGGG GCCCGAACAA GAGGCCAGCA AAGGGTGGAG GAAGCCCCTG 901 TGAAAAAAGC GAAGCGATAC CCAACTTTCT TGTACAAAGT GGTTGATATC GGTAAGCCTA 961 TCCCTAACCC TCTCCTCGGT CTCGATTCTA CGTAGTAATG AACTAGTCCG TAACTTGAAA 1021 GTATTTCGAT TTCTTGGCTT TATATATCTT GTGGAAAGGA CGACCGTGTA ATTTAAGTAC 1081 TCTGTTAACG CGTTAAGTCg acaatcaacc tctggattac aaaatttgtg aaagatt