Construct: ORF TRCN0000478235
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF000599.1_s317c1
- Derived from:
- ccsbBroadEn_10645
- DNA Barcode:
- TACGAAATCCTACATCTACTAGGT
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- LINC01667 (441058)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000478235
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 441058 | LINC01667 | long intergenic non-protein... | NR_038377.1 | 13.3% | 1_98del;182G>T;261_1207del | |
| 2 | human | 102723847 | LOC102723847 | uncharacterized LOC102723847 | XR_002958870.1 | 4.1% | (many diffs) | |
| 3 | human | 102723847 | LOC102723847 | uncharacterized LOC102723847 | XR_002958871.1 | 4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 90
- ORF end:
- 252
- ORF length:
- 162
- Sequence:
-
1 TCAGACAGTG GTTCAAAGTT TTTTTCTTCC ATTTCAGGTG TCGTGAGGCT AGCATCGATT 61 GATCAACAAG TTTGTACAAA AAAGTTGGCA TGATGAAACC CCAGGCGGAG ACGGGGGAAG 121 CAGCACGGGA TCCCAGCCTC AGGCCTGCAC GGACGGTGTT GGTTGGGTCA CTTTCATGGC 181 TAAGAAAGCA ACTCCAACCC ACACACTGCA AATATGAAGG ACCACGAAAG GCACGCAGGC 241 TCTGGTTTGC ATACCCAACT TTCTTGTACA AAGTGGTTGA TATCGGTAAG CCTATCCCTA 301 ACCCTCTCCT CGGTCTCGAT TCTACGTAGT AATGAACTAG TCCGTAACTT GAAAGTATTT 361 CGATTTCTTG GCTTTATATA TCTTGTGGAA AGGACGATAC GAAATCCTAC ATCTACTAGG 421 TACGCGTTAA GTCgacaatc aacctctgga ttacaaaatt tgtgaaagat t