Construct: ORF TRCN0000478543
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF014687.1_s317c1
- Derived from:
- ccsbBroadEn_06590
- DNA Barcode:
- TCGCGGCATGTCGTACCGTTGTGA
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- MMP7 (4316)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000478543
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 4316 | MMP7 | matrix metallopeptidase 7 | NM_002423.5 | 99.8% | 99.6% | 230G>A |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 867
- ORF length:
- 801
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatgcg actcaccgtg ctgtgtgctg tgtgcctgct gcctggcagc ctggccctgc 121 cgctgcctca ggaggcggga ggcatgagtg agctacagtg ggaacaggct caggactatc 181 tcaagagatt ttatctctat gactcagaaa caaaaaatgc caacagttta gaagccaaac 241 tcaaggagat gcaaaaattc tttggcctac ctataactgg aatgttaaac tcccacgtca 301 tagaaataat gcagaagccc agatgtggag tgccagatgt tgcagaatac tcactatttc 361 caaatagccc aaaatggact tccaaagtgg tcacctacag gatcgtatca tatactcgag 421 acttaccgca tattacagtg gatcgattag tgtcaaaggc tttaaacatg tggggcaaag 481 agaTCCCCCT GCATTTCAGG AAAGTTGTAT GGGGAACTGC TGACATCATG ATTGGCTTTG 541 CGCGAGGAGC TCATGGGGAC TCCTACCCAT TTGATGGGCC AGGAAACACG CTGGCTCATG 601 CCTTTGCGCC TGGGACAGGT CTCGGAGGAG ATGCTCACTT CGATGAGGAT GAACGCTGGA 661 CGGATGGTAG CAGTCTAGGG ATTAACTTCC TGTATGCTGC AACTCATGAA CTTGGCCATT 721 CTTTGGGTAT GGGACATTCC TCTGATCCTA ATGCAGTGAT GTATCCAACC TATGGAAATG 781 GAGATCCCCA AAATTTTAAA CTTTCCCAGG ATGATATTAA AGGCATTCAG AAACTATATG 841 GAAAGAGAAG TAATTCAAGA AAGAAATACC CAACTTTCTT GTACAAAGTG GTTGATATCG 901 GTAAGCCTAT CCCTAACCCT CTCCTCGGTC TCGATTCTAC GTAGTAATGA ACTAGTCCGT 961 AACTTGAAAG TATTTCGATT TCTTGGCTTT ATATATCTTG TGGAAAGGAC GATCGCGGCA 1021 TGTCGTACCG TTGTGAACGC GTTAAGTCga caatcaacct ctggattaca aaatttgtga 1081 aagatt