Construct: ORF TRCN0000478965
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF005770.1_s317c1
- Derived from:
- ccsbBroadEn_02925
- DNA Barcode:
- TTGGAAATCGTAACGTAGTACAAT
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- C10orf12 (26148)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000478965
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 84458 | LCOR | ligand dependent nuclear re... | NM_001346516.2 | 80% | 80% | 1_930del |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 3807
- ORF length:
- 3741
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatgca gagttcagct ttagtagaaa gtctaattac agtaaaaatg gcagctgaga 121 atagtgagga aggcaatacc tgtattattc ctcaaagaaa tttgttcaaa gctttatcag 181 aagaggcttg gaactcaggg tttatgggga actcatctag aactgctgac aaagagaata 241 ctttacagtg tccaaaaaca cctttgcgcc aggatttaga ggcaaatgaa caagatgcaa 301 ggccaaagca agagaaccat cttcactctc tgggaagaaa taaggtgggt taccatttac 361 atcccagtga taagggccag tttgatcatt ccaaagatgg ttggttaggc cccggcccta 421 tgccagctgt acacaaagcg gcaaatggac actcaagaac caagatgata tcaacctcca 481 tcaagacagc tcggaaaagt aaaagggcat cagggctgag gataaatgat tatgataacc 541 agtgtgatgt tgtttatatc agtcaaccaa taacagaatg ccactttgag aatcaaaaat 601 caatattatc ttctcggaaa acagccagaa agagtactcg aggatacttt ttcaatggtg 661 actgttgtga gctgccaact gttcgtacac tggccagaaa tttacactcc caggaaaaag 721 caagctgctc agcattggca tcagaggcag ttttcactcc taagcagacc cttacaattc 781 cagcccctag acatacagta gatgtgcagc ttcccagaga agacaaccct gaagaaccta 841 gcaaggaaat cacctctcac gaggaaggag gtggagacgt ttcacctcga aaagaacctc 901 aagagcctga ggtttgcccc acaaagatta agccgaacct gagcagctcc cctaggtcag 961 aggaaacgac agcctccagc ctggtgtggc ctctccctgc tcaccttcct gaagaggacc 1021 tgccagaagg tggctccaca gtctcagctc ccacagcaag tgggatgtct tctcctgaac 1081 acaaccaacc accagttgca ctgttggata cggaggagat gagtgtaccc caggactgtc 1141 acctccttcc ctccactgaa agcttttccg ggggagtcag tgaagatgtc atttctaggc 1201 ctcattctcc tcctgaaata gtcagtagag aagaaagtcc tcagtgctca gaaaatcaga 1261 gttccccaat gggcttggag ccccccatga gtctgggaaa ggctgaggac aaccaaagca 1321 tcagtgctga ggttgagtct ggagacaccc aggagctaaa tgtcgaccca ctcttgaagg 1381 aaagcagcac ttttactgat gaaaacccca gtgaaactga ggaaagtgag gcagcaggtg 1441 gtataggaaa attagaggga gaggacggtg atgtaaaatg cctgtcagaa aaagacacgt 1501 atgatacaag cattgactca ctcgaagaga atttggacaa gaagaaaaaa ggtaaaaaat 1561 tccctgaggc ctctgatagg tgcctaagaa gtcaactttc ggattcttcc tctgctgaca 1621 gatgcctaag aaatcagagt tcagattctt cctcagcttg tcttgaaatc aaagttccta 1681 aaaatcctag tgcaaaacgt tcaaaaaaag aagggcaccc tggtgggaca acacctaagg 1741 gccttctacc tgacagtttc cacacggaaa ctctggagga cacagaaaag ccaagtgtca 1801 atgaacgccc ctctgagaaa gatgctgagc aggagggcga aggcgggggg atcatcacca 1861 ggcagacttt gaaaaacatg ctggacaaag aagtcaagga gttacgagga gagattttcc 1921 ccagcaggga ccccataacc acagctggac agccactgcc tggagagaga ttggaaatct 1981 atgttcagtc taaaatggat gagaagaatg ctcatatccc ctcagaaagt attgcttgta 2041 agagggaccc agaacaggca aaagaagagc cagggcatat tcccacacag catgtggagg 2101 aggctgtgaa tgaggtagac aacgaaaaca cccagcagaa agatgatgag agtgatgccc 2161 catgcagctc tcttgggttg tcgagtagtg gaagtggtga tgctgctagg gcaccaaaat 2221 cggtgccaag gcctaaaaga ttgacctctt caacctacaa cctaagacac gctcattctc 2281 tgggctcctt ggatgcttca aaagtgactt cagaaaagga agctgcacaa gtaaacccca 2341 taatgccaaa ggaaaatgga gcttcagaga gtggagaccc cctagatgag gacgatgttg 2401 acaccgtggt agatgaacag ccaaagttta tggaatggtg tgctgaggag gagaaccaag 2461 agctcatcgc caacttcaat gcccagtaca tgaaagttca gaagggctgg atccagttgg 2521 agaaagaagg acagccaaca ccaagagcaa ggaacaaatc agataaactg aaagagattt 2581 ggaaaagcaa gaaaaggtca cggaaatgta ggagttcatt ggagagtcag aagtgttctc 2641 ctgttcagat gctctttatg acaaacttta aattatctaa tgtttgtaaa tggttcttag 2701 agacaactga aacccggtct ctagtcattg tgaagaagct caatactcgc cttccaggag 2761 acgttccccc tgtcaagcat cctcttcaga aatacgctcc ttccagccta tatcccagtt 2821 cactacaggc tgagcgcttg aaaaagcact tgaagaaatt tcctggagct acccctgcta 2881 agaataattg gaaaatgcag aagctctggg ccaaatttcg agagaatcct gatcaagtgg 2941 agccagaaga tggcagtgat gtcagccccg gccctaattc tgaagacagc atagaggaag 3001 tcaaggaaga tagaaacagt catcctccag caaacctgcc cactccagcc agtacccgga 3061 ttcttagaaa atattccaat attcgaggaa agctcagagc ccagcaacgt ttaatcaaga 3121 atgagaaaat ggaatgccca gatgctctgg ctgtggaaag taagccaagt cgtaagagcg 3181 tatgcatcaa ccctctgatg tcccccaagc ttgccctgca agtggatgca gatgggtttc 3241 ctgttaagcc caagagtact gaaggaatga agggaaggaa ggggaagcag gtgtctgaaa 3301 tcttgcctaa agcagaagtt cagagtaaac gcaagagaac agaaggcagc agccctccag 3361 atagtaagaa caaggggcct acggtgaaag ccagcaaaga aaagcatgct gatggagcca 3421 CCAAAACCCC TGCTGCCAAG AGGCCAGCTG CAAGGGACAG AAGCAGCCAA CCCCCCAAAA 3481 AGACGTCTTT GAAAGAGAAT AAAGTGAAGA TCCCTAAAAA GTCCGCTGGG AAGAGCTGCC 3541 CTCCCTCCAG GAAAGAAAAA GAGAATACAA ACAAAAGGCC TTCCCAGTCT ATTGCCTCGG 3601 AAACACTGAC GAAACCTGCA AAACAGAAGG GGGCCGGTGA ATCCTCTTCA AGGCCTCAGA 3661 AAGCCACGAA TAGGAAGCAG AGTAGTGGAA AGACTCGGGC CAGACCCTCA ACGAAAACCC 3721 CAGAGAGCAG TGCAGCTCAG AGAAAGCGAA AGCTGAAGGC AAAGCTGGAC TGTTCGCACA 3781 GCAAACGGAG GCGGCTGGAT GCAAAGTGCC CAACTTTCTT GTACAAAGTG GTTGATATCG 3841 GTAAGCCTAT CCCTAACCCT CTCCTCGGTC TCGATTCTAC GTAGTAATGA ACTAGTCCGT 3901 AACTTGAAAG TATTTCGATT TCTTGGCTTT ATATATCTTG TGGAAAGGAC GATTGGAAAT 3961 CGTAACGTAG TACAATACGC GTTAAGTCga caatcaacct ctggattaca aaatttgtga 4021 aagatt